Analysis and generic properties of gene regulatory networks with graded response functions
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Publication:1776982
DOI10.1016/j.physd.2004.11.014zbMath1078.34015MaRDI QIDQ1776982
Publication date: 12 May 2005
Published in: Physica D (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.physd.2004.11.014
34C05: Topological structure of integral curves, singular points, limit cycles of ordinary differential equations
34C60: Qualitative investigation and simulation of ordinary differential equation models
92D10: Genetics and epigenetics
34E15: Singular perturbations for ordinary differential equations
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Cites Work
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- Qualitative simulation of genetic regulatory networks using piecewise-linear models
- Modeling transcriptional control in gene networks -- methods, recent results, and future directions
- Stable oscillations in mathematical models of biological control systems
- A methodological basis for description and analysis of systems with complex switch-like interactions
- Chaos in high-dimensional neural and gene networks
- Combinatorial explosion in model gene networks
- Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach
- Lifting standard bases in filtered structures
- A class of piecewise linear differential equations arising in biological models
- Global analysis of steady points for systems of differential equations with sigmoid interactions
- Periodic solutions in systems of piecewise- linear differential equations
- Singular Perturbations on the Infinite Interval
- Analysis of continuous-time switching networks