Large-scale chromosome folding versus genomic DNA sequences: a discrete double Fourier transform technique

DOI10.1016/J.JTBI.2017.05.033zbMath1381.92068arXiv1702.08267OpenAlexW2614634492WikidataQ38759387 ScholiaQ38759387MaRDI QIDQ1702274

V. V. Lobzin, Vladimir R. Chechetkin

Publication date: 28 February 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1702.08267

zbMATH Keywords

Fourier transform\textit{Escherichia coli}genome organizationchromosome architecturegenomic DNA sequences

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Protein sequences, DNA sequences (92D20)

Cites Work

• Unnamed Item
• Statistics of genome architecture
• Spectral sum rules and search for periodicities in DNA sequences
• Upstream curved sequences in \textit{E. coli} are related to the regulation of transcription initiation
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• On the spectral criteria of disorder in nonperiodic sequences: application to inflation models, symbolic dynamics and DNA sequences

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