Spectral sum rules and search for periodicities in DNA sequences
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Publication:434008
DOI10.1016/J.PHYSLETA.2011.03.007zbMATH Open1242.92022arXiv1104.0541OpenAlexW1764874473MaRDI QIDQ434008FDOQ434008
Authors: Vladimir R. Chechetkin 
Publication date: 9 July 2012
Published in: Physics Letters. A (Search for Journal in Brave)
Abstract: Periodic patterns play the important regulatory and structural roles in genomic DNA sequences. Commonly, the underlying periodicities should be understood in a broad statistical sense, since the corresponding periodic patterns have been strongly distorted by the random point mutations and insertions/deletions during molecular evolution. The latent periodicities in DNA sequences can be efficiently displayed by Fourier transform. The criteria of significance for observed periodicities are obtained via the comparison versus the counterpart characteristics of the reference random sequences. We show that the restrictions imposed on the significance criteria by the rigorous spectral sum rules can be rationally described with De Finetti distribution. This distribution provides the convenient intermediate asymptotic form between Rayleigh distribution and exact combinatoric theory.
Full work available at URL: https://arxiv.org/abs/1104.0541
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Cites Work
- Title not available (Why is that?)
- Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
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- On the spectral criteria of disorder in nonperiodic sequences: application to inflation models, symbolic dynamics and DNA sequences
Cited In (5)
- Statistics of genome architecture
- Periodic power spectrum with applications in detection of latent periodicities in DNA sequences
- Spectral entropy criteria for structural segmentation in genomic DNA sequences
- Large-scale chromosome folding versus genomic DNA sequences: a discrete double Fourier transform technique
- Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences
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