Statistical tools for discovering pseudo-periodicities in biological sequences

DOI10.1051/PS:2001107MaRDI QIDQ4534848zbMATHOpenAlexFDO

Authors Bernard Prum, Élisabeth de Turckheim, Martin Vingron

Publication date 11 June 2002

Published in ESAIM: Probability and Statistics (Search for Journal in Brave)

Full work available at URL http://www.numdam.org/item?id=PS_2001__5__171_0

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Asymptotic properties of nonparametric inference (62G20) Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

• Spectral analysis of periodically behaving biological time series
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
• scientific article; zbMATH DE number 3839184
• Revisiting the relationship between compositional sequence complexity and periodicity
• Testing for Periodicity in a Time Series

Cites work

• A central limit theorem for dependent random variables
• Approximation Theorems of Mathematical Statistics
• Identifying periodic occurrences of a template with applications to protein structure
• Mixing: Properties and examples
• Time series: theory and methods

Cited in

(7)

• Study of the periodicity in Euro-US Dollar exchange rates using local alignment and random matrices
• Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences
• Biosequence Time–Frequency Processing: Pathogen Detection and Identification
• Spectral sum rules and search for periodicities in DNA sequences
• Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming
• The performances of the chi-square test and complexity measures for signal recognition in biological sequences
• Latent periodicity of serine-threonine and tyrosine protein kinases and other protein families

This page was built for publication: Statistical tools for discovering pseudo-periodicities in biological sequences

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4534848)