Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
From MaRDI portal
Publication:3471897
DOI10.1073/PNAS.87.6.2264zbMATH Open0695.92004OpenAlexW2094519647WikidataQ24558736 ScholiaQ24558736MaRDI QIDQ3471897FDOQ3471897
Authors: Samuel Karlin, Stephen F. Altschul 
Publication date: 1990
Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc53667
Recommendations
- scientific article; zbMATH DE number 1746440
- Rapid and accurate estimates of statistical significance for sequence data base searches.
- Maximum-likelihood estimation of the statistical distribution of Smith- Waterman local sequence similarity scores
- Statistics of optimal sequence alignments.
- Statistical composition of high-scoring segments from molecular sequences
sequence alignmentprotein sequencesamino acid similaritybiologically relevant patternscomposition of high-scoring segmentscystic fibrosis genehydrophobic segmentsprotooncogene products
Applications of statistics to biology and medical sciences; meta analysis (62P10) Physiological, cellular and medical topics (92Cxx)
Cited In (57)
- Finding important sites in protein sequences
- On the use of statistics in genomics and bioinformatics
- Improvements on the distribution of maximal segmental scores in a Markovian sequence
- Rapid and accurate estimates of statistical significance for sequence data base searches.
- Chemogenomics: Looking at biology through the lens of chemistry
- An impossibility result for phylogeny reconstruction from \(k\)-mer counts
- Markov Additive Processes and Repeats in Sequences
- An improved approximation for assessing the statistical significance of molecular sequence features
- Title not available (Why is that?)
- Mathematics and the life-sciences: a personal point of view
- Asymptotics for local maximal stack scores with general loop penalty function
- Walking through protein sequence space
- A local algorithm for DNA sequence alignment with inversions
- A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
- Applying statistical criteria to choose optimal metaparameters in gene fragment recognition
- Analytic combinatorics for computing seeding probabilities
- LandScape: a simple method to aggregate \(p\)-values and other stochastic variables without a priori grouping
- Detecting conserved secondary structures in RNA molecules using constrained structural alignment
- Content-based networks: A pedagogical overview
- Problems of ruin and survival in economics: applications of limit theorems in probability
- A comparison of scores of two protein structures with foldings
- Exact distribution for the local score of a Markov chain
- Path reversal, islands, and the gapped alignment of random sequences
- Central limit theorems of partial sums for large segmental values
- Two parallel algorithms for finding all minimal maximum subsequences
- The combinatorics and extreme value statistics of protein threading
- An analytic study of the phase transition line in local sequence alignment with gaps
- Elements related to the largest complete excursion of a reflected BM stopped at a fixed time. Application to local score
- A note on independence assumption on binding sites in biological sequence analysis
- Comparative analysis of core promoter region: Information content from mono and dinucleotide substitution matrices
- Looking for a sequence based allostery definition: a statistical journey at different resolution scales
- New approximate \(P\)-value of gapped local sequence alignments
- Duality between the local score of one sequence and constrained hidden Markov model
- Normalized global alignment for protein sequences
- The performances of the chi-square test and complexity measures for signal recognition in biological sequences
- Statistical composition of high-scoring segments from molecular sequences
- Probability density function of the local score position
- Microscopic path structure of optimally aligned random sequences
- Comparison of five test of fit for the extreme value distribution
- Outlier detection in BLAST hits
- Exact distribution of the local score for Markovian sequences
- What's behind blast
- Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times
- An overview of recent developments in genomics and associated statistical methods
- Statistical tools for discovering pseudo-periodicities in biological sequences
- Shuffling biological sequences
- An Eulerian path approach to local multiple alignment for DNA sequences
- Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons
- Quasi-best match graphs
- Assessing the Statistical Significance of Overrepresented Oligonucleotides
- Title not available (Why is that?)
- Maximum-likelihood estimation of the statistical distribution of Smith- Waterman local sequence similarity scores
- Statistical methods for DNA sequence segmentation
- An accurate approximation to the distribution of the length of the longest matching word between two random DNA sequences
- An adaptive multi-policy grid service for biological sequence comparison
- A sequential naïve Bayes classifier for DNA barcodes
- Title not available (Why is that?)
This page was built for publication: Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3471897)
