Assessing the Statistical Significance of Overrepresented Oligonucleotides

DOI10.1007/3-540-44696-6_7MaRDI QIDQ4801141zbMATH OpenOpenAlexFDO

Authors Mireille Régnier, Mathias Vandenbogaert, Alain Denise

Publication date 6 April 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://hal.inria.fr/inria-00072496/file/RR-4132.pdf

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Algorithms in computer science (68W99)

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Cited in

(8)

• Large deviation properties for patterns
• On overabundant words and their application to biological sequence analysis
• Permutation methods for testing the significance of phosphorylation motifs
• The performances of the chi-square test and complexity measures for signal recognition in biological sequences
• Optimal computation of overabundant words
• On the First k Moments of the Random Count of a Pattern in a Multistate Sequence Generated by a Markov Source
• Shuffling biological sequences with motif constraints
• Sparse approaches for the exact distribution of patterns in long state sequences generated by a Markov source

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