Statistics of optimal sequence alignments.

zbMATH Open1348.92004MaRDI QIDQ3585138FDOQ3585138

Authors: Steffen Grossmann 

Publication date: 19 August 2010

Full work available at URL: http://publikationen.ub.uni-frankfurt.de/volltexte/2003/292/

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zbMATH Keywords

optimal local alignment scoresequence alignment algorithms

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Biochemistry, molecular biology (92C40) Research exposition (monographs, survey articles) pertaining to biology (92-02)

Cited In (19)

• A Poisson model for gapped local alignments
• Algorithm for statistical alignment of two sequences derived from a Poisson sequence length distribution
• Extreme value theory in some statistical analysis of genomic sequences
• Approximate \(p\)-values for local sequence alignments.
• On the Dependence Structure of Sequence Alignment Scores Calculated with Multiple Scoring Matrices
• Statistical properties of similarity score functions
• Upper bounds and importance sampling of \(p\)-values of DNA and protein sequence alignments
• Sequence similarity, motif detection and alignments with \(N\)-local decoded anchor points.
• Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
• Title not available (Why is that?)
• Consistency of optimal sequence alignments
• Title not available (Why is that?)
• Significance levels for biological sequence comparison using non-linear similarity functions
• Patterns and alignments in random chains.
• Title not available (Why is that?)
• Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment
• Alignment Statistics for Long-Range Correlated Genomic Sequences
• A nonlinear measure of subalignment similarity and its significance levels
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.

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