Statistics of optimal sequence alignments.

MaRDI QIDQ3585138zbMATHFDO

Authors Steffen Grossmann

Publication date 19 August 2010

Full work available at URL http://publikationen.ub.uni-frankfurt.de/volltexte/2003/292/

zbMATH Keywords

optimal local alignment scoresequence alignment algorithms

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Biochemistry, molecular biology (92C40) Research exposition (monographs, survey articles) pertaining to biology (92-02)

Recommendations

• Letter change bias and local uniqueness in optimal sequence alignments
• Approximate \(p\)-values for local sequence alignments.
• Publication:4731046
• scientific article; zbMATH DE number 45430
• Toward an accurate statistics of gapped alignments

Cited in

(25)

• On the Dependence Structure of Sequence Alignment Scores Calculated with Multiple Scoring Matrices
• A nonlinear measure of subalignment similarity and its significance levels
• Algorithm for statistical alignment of two sequences derived from a Poisson sequence length distribution
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
• scientific article; zbMATH DE number 45430 (Why is no real title available?)
• scientific article; zbMATH DE number 4116362 (Why is no real title available?)
• Consistency of optimal sequence alignments
• Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
• scientific article; zbMATH DE number 434721 (Why is no real title available?)
• Extreme value theory in some statistical analysis of genomic sequences
• Sequence similarity, motif detection and alignments with \(N\)-local decoded anchor points.
• scientific article; zbMATH DE number 2247647 (Why is no real title available?)
• Significance levels for biological sequence comparison using non-linear similarity functions
• Upper bounds and importance sampling of \(p\)-values of DNA and protein sequence alignments
• Computing posterior probabilities for score-based alignments using ppALIGN
• Letter change bias and local uniqueness in optimal sequence alignments
• A Poisson model for gapped local alignments
• On expected score of cellwise alignments
• A Monte Carlo approach to the fluctuation problem in optimal alignments of random strings
• Toward an accurate statistics of gapped alignments
• Statistical properties of similarity score functions
• Approximate \(p\)-values for local sequence alignments.
• Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment
• Alignment Statistics for Long-Range Correlated Genomic Sequences
• Patterns and alignments in random chains.

This page was built for publication: Statistics of optimal sequence alignments.

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3585138)