Approximate p-values for local sequence alignments.
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Approximate \(p\)-values for local sequence alignments.
Recommendations
- New approximate \(P\)-value of gapped local sequence alignments
- Statistics of optimal sequence alignments.
- Upper bounds and importance sampling of \(p\)-values of DNA and protein sequence alignments
- Letter change bias and local uniqueness in optimal sequence alignments
- Toward an accurate statistics of gapped alignments
Cites work
- A new representation for a renewal-theoretic constant appearing in asymptotic approximations of large deviations
- A Poisson approximation for sequence comparisons with insertions and deletions
- Biological Sequence Analysis
- Chernoff-type bound for finite Markov chains
- scientific article; zbMATH DE number 3766893 (Why is no real title available?)
- scientific article; zbMATH DE number 48363 (Why is no real title available?)
- scientific article; zbMATH DE number 3538576 (Why is no real title available?)
- scientific article; zbMATH DE number 699389 (Why is no real title available?)
- Large deviations for the maxima of some random fields
- Limit distribution of maximal non-aligned two-sequence segmental score
- Limit distributions of maximal segmental score among Markov-dependent partial sums
- Limit theorems for semi-Markov processes and renewal theory for Markov chains
- Probability with Martingales
- Risk theory in a Markovian environment
- Sequence comparison significance and Poisson approximation
- Sequential analysis. Tests and confidence intervals
- Tail probabilities for the null distribution of scanning statistics
- The Erdős-Rényi law in distribution, for coin tossing and sequence matching
- Two moments suffice for Poisson approximations: The Chen-Stein method
Cited in
(22)- Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times
- Upper bounds and importance sampling of \(p\)-values of DNA and protein sequence alignments
- Hardness of approximation for non-overlapping local alignments.
- Herbert Robbins and sequential analysis
- An analytic study of the phase transition line in local sequence alignment with gaps
- Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
- A Poisson model for gapped local alignments
- Compound Poisson approximation for regularly varying fields with application to sequence alignment
- New approximate \(P\)-value of gapped local sequence alignments
- The maximum of a random walk reflected at a general barrier
- Toward an accurate statistics of gapped alignments
- Proportion of Gaps and Fluctuations of the Optimal Score in Random Sequence Comparison
- SEPA: Approximate Non-subjective Empirical p-Value Estimation for Nucleotide Sequence Alignment
- Statistics of optimal sequence alignments.
- Optimal alignments of longest common subsequences and their path properties
- Path reversal, islands, and the gapped alignment of random sequences
- Asymptotics for local maximal stack scores with general loop penalty function
- Summation test for gap penalties and strong law of the local alignment score
- On the Dependence Structure of Sequence Alignment Scores Calculated with Multiple Scoring Matrices
- Maximum-likelihood estimation of the statistical distribution of Smith- Waterman local sequence similarity scores
- Local alignment of Markov chains
- Minimax optimality of the Shiryayev-Roberts change-point detection rule
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