Biological Sequence Analysis
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(only showing first 100 items - show all)- Cost-sensitive feature acquisition and classification
- Inference in population genetics using forward and backward, discrete and continuous time processes
- Genomic Perl
- Moderate deviations for word counts in biological sequences
- Optimal cost almost-sure reachability in POMDPs
- Asymptotic behaviour of the posterior distribution in approximate Bayesian computation
- Optimal alignments of longest common subsequences and their path properties
- A strongly polynomial algorithm for criticality of branching processes and consistency of stochastic context-free grammars
- Algorithms for path-constrained sequence alignment
- Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
- Strong law of large numbers for hidden Markov chains indexed by an infinite tree with uniformly bounded degrees
- Hidden semi-Markov models with inhomogeneous state dwell-time distributions
- scientific article; zbMATH DE number 7559176 (Why is no real title available?)
- Testing for two states in a hidden Markov model
- Approximately counting approximately-shortest paths in directed acyclic graphs
- A sufficient condition for reducing recursions in hidden Markov models
- Deciding word neighborhood with universal neighborhood automata
- Sparse RNA folding: time and space efficient algorithms
- Hidden Markov models with binary dependence
- Learning state machine-based string edit kernels
- An analytic solution for estimating two-dimensional hidden Markov models
- Hidden Markov models for multivariate functional data
- A hidden Markov model applied to the protein 3D structure analysis
- Component-based discriminative classification for hidden Markov models
- Predicting RNA secondary structures with pseudoknots by MCMC sampling
- KIS: an automated attribute induction method for classification of DNA sequences
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- Orphan gene finding -- an exon assembly approach.
- Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
- Biosequence Time–Frequency Processing: Pathogen Detection and Identification
- An impossibility result for phylogeny reconstruction from \(k\)-mer counts
- Spectral neighbor joining for reconstruction of latent tree models
- What is decidable about partially observable Markov decision processes with \(\omega\)-regular objectives
- Improvements on the distribution of maximal segmental scores in a Markovian sequence
- Chronological rank in biological evolution
- Inference attacks on genomic privacy with an improved HMM and an RCNN model for unrelated individuals
- A note on probabilistic models over strings: the linear algebra approach
- An improved approximation for assessing the statistical significance of molecular sequence features
- On the rate of convergence for the length of the longest common subsequences in hidden Markov models
- Confluence modulo equivalence in Constraint Handling Rules
- Normal approximation for functions of hidden Markov models
- Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar
- Computation of distances for regular and context-free probabilistic languages
- Fast profile matching algorithms - A survey
- Hidden Markov models for stochastic thermodynamics
- Computing the expected edit distance from a string to a probabilistic finite-state automaton
- EDIT-DISTANCE OF WEIGHTED AUTOMATA: GENERAL DEFINITIONS AND ALGORITHMS
- Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition
- scientific article; zbMATH DE number 5964734 (Why is no real title available?)
- Transducing Markov sequences
- The most probable annotation problem in HMMs and its application to bioinformatics
- Promote or inhibit? Research on the transition of consumer potential purchase intention
- A note on the complexity of comparing succinctly represented integers, with an application to maximum probability parsing
- Pattern recognition methods for advanced stochastic protein sequence analysis using HMMs
- Sequence-driven features for prediction of subcellular localization of proteins
- Bayesian annotation networks for complex sequence analysis
- Potential Functions for Signals and Symbolic Sequences
- Markov-switching model selection using Kullback-Leibler divergence
- Modelling DNA and RNA secondary structures using matrix insertion-deletion systems
- Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
- A tabu search algorithm for maximum parsimony phylogeny inference
- Bootstrapping phylogenetic trees: theory and methods
- Witnessing the quasiperiodic-ordering transition of one-dimensional \(k\)-component Fibonacci sequences
- A New Method for Learning Imprecise Hidden Markov Models
- Pairwise Markov models and hybrid segmentation approach
- Towards an information-theoretic framework for multiple sequence alignment sub-sampling
- Lower bounds for moments of global scores of pairwise Markov chains
- Large deviations for random trees
- Estimation of steady-state quantities of an HMM with some rarely generated emissions
- Spectral distortion measures for biological sequence comparisons and database searching
- Sequence annotation with HMMs: new problems and their complexity
- BayesCAT: Bayesian co-estimation of alignment and tree
- Summation test for gap penalties and strong law of the local alignment score
- Introduction to computational biology. An evolutionary approach. With CD-ROM
- Genome assembly, from practice to theory: safe, complete and linear-time
- Computation of mutual information from hidden Markov models
- Selecting effective siRNA target sequences by using Bayes' theorem
- A Markovian approach for the prediction of mouse isochores
- Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
- On the entropy of protein families
- Large-deviation properties of largest component for random graphs
- Novel evolutionary models and applications to sequence alignment problems
- 2-adic clustering of the PAM matrix
- Redefining CpG islands using hidden Markov models
- If the current clique algorithms are optimal, so is Valiant's parser
- Sequence comparison via polar coordinates representation and curve tree
- Modeling Dependence in Evolutionary Inference for Proteins
- Gap filling as exact path length problem
- A fuzzy model of predicting RNA secondary structure
- A coarse-grained Markov chain is a hidden Markov model
- ON THE COMPUTATION OF THE RELATIVE ENTROPY OF PROBABILISTIC AUTOMATA
- Parametric inference for biological sequence analysis
- Analytic combinatorics for computing seeding probabilities
- Approximation of sojourn-times via maximal couplings: motif frequency distributions
- Approximate \(p\)-values for local sequence alignments.
- Transmission valuation analysis based on real options with price spikes
- Generalized Hierarchical Markov Models for the Discovery of Length‐Constrained Sequence Features from Genome Tiling Arrays
- A disambiguation algorithm for finite automata and functional transducers
- Penalized estimation in high-dimensional hidden Markov models with state-specific graphical models
- Are biological systems poised at criticality?
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