Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA

DOI10.1016/J.JTBI.2012.10.023zbMath1406.92466OpenAlexW1988678914WikidataQ36514140 ScholiaQ36514140MaRDI QIDQ1715112

Timothy I. Shaw, Yingfeng Wang, Amirhossein Manzourolajdad, Russell L. Malmberg

Publication date: 4 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3538908

zbMATH Keywords

stochastic context-free grammarsRNA secondary structureriboswitchstructural ambiguitystructural entropy

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Measures of information, entropy (94A17) Information theory (general) (94A15)

Uses Software

• GenRGenS
• Mfold

Cites Work

• A Mathematical Theory of Communication
• Moments of the Boltzmann distribution for RNA secondary structures
• Boltzmann ensemble features of RNA secondary structures: a comparative analysis of biological RNA sequences and random shuffles
• Biological Sequence Analysis
• Elements of Information Theory
• Information Theory, Evolution, and the Origin of Life

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