Mfold
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Related Items (39)
On topological indices for small RNA graphs ⋮ The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability ⋮ Dynamic extended folding: modeling the RNA secondary structures during co-transcriptional folding ⋮ HBV-encoded microRNA candidate and its target ⋮ Large deviations for random trees and the branching of RNA secondary structures ⋮ RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup ⋮ On the Structure of RNA Branching Polytopes ⋮ Regulatory Signals in Genomic Sequences ⋮ Computational identification of microRNAs and their targets ⋮ RNA secondary structures with given motif specification: combinatorics and algorithms ⋮ Systematic discovery of the grammar of translational inhibition by RNA hairpins ⋮ Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences ⋮ Symmetric time warping, Boltzmann pair probabilities and functional genomics ⋮ Combinatorics of locally optimal RNA secondary structures ⋮ Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA ⋮ Expected distance between terminal nucleotides of RNA secondary structures ⋮ Asymptotic number of hairpins of saturated RNA secondary structures ⋮ Unified approach to partition functions of RNA secondary structures ⋮ Introduction to special issue on RNA ⋮ Computational methods in noncoding RNA research ⋮ Boltzmann ensemble features of RNA secondary structures: a comparative analysis of biological RNA sequences and random shuffles ⋮ A fuzzy model of predicting RNA secondary structure ⋮ Sparse RNA folding: time and space efficient algorithms ⋮ On the page number of RNA secondary structures with pseudoknots ⋮ Parametric analysis of RNA branching configurations ⋮ RNA bioinformatics ⋮ Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks ⋮ Cofolga: a genetic algorithm for finding the common folding of two RNAs ⋮ The end-to-end distance of RNA as a randomly self-paired polymer ⋮ Ruleset optimization on isomorphic oritatami systems ⋮ Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase' ⋮ On conflict free DNA codes ⋮ In silico analysis of EST and genomic sequences allowed the prediction of cis-regulatory elements for Entamoeba histolytica mRNA polyadenylation ⋮ Detecting conserved secondary structures in RNA molecules using constrained structural alignment ⋮ Computational identification of novel microRNA homologs in the chimpanzee genome ⋮ Computational identification of 48 potato microRNAs and their targets ⋮ A grammatical approach to RNA-RNA interaction prediction ⋮ Sparse RNA Folding: Time and Space Efficient Algorithms ⋮ Nondeterministic Seedless Oritatami Systems and Hardness of Testing Their Equivalence
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