Cited in
(only showing first 100 items - show all)- PSoL
- KineFold
- RNAlign
- EST-PAGE
- ddbRNA
- DINAMelt
- OligoArray
- HBV-encoded microRNA candidate and its target
- Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks
- The end-to-end distance of RNA as a randomly self-paired polymer
- On conflict free DNA codes
- Unified approach to partition functions of RNA secondary structures
- Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'
- Expected distance between terminal nucleotides of RNA secondary structures
- Ruleset optimization on isomorphic oritatami systems
- Asymptotic number of hairpins of saturated RNA secondary structures
- The ambush hypothesis at the whole-organism level: off frame, `hidden' stops in vertebrate mitochondrial genes increase developmental stability
- Large deviations for random trees and the branching of RNA secondary structures
- Sparse RNA Folding: Time and Space Efficient Algorithms
- Glasgow subgraph solver
- vf3lib
- On the page number of RNA secondary structures with pseudoknots
- Regulatory Signals in Genomic Sequences
- Boltzmann ensemble features of RNA secondary structures: a comparative analysis of biological RNA sequences and random shuffles
- Computational methods in noncoding RNA research
- Introduction to special issue on RNA
- Systematic discovery of the grammar of translational inhibition by RNA hairpins
- RNA secondary structures with given motif specification: combinatorics and algorithms
- Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA
- Sparse RNA folding: time and space efficient algorithms
- Nondeterministic seedless oritatami systems and hardness of testing their equivalence
- Cofolga: a genetic algorithm for finding the common folding of two RNAs
- Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences
- Parametric analysis of RNA branching configurations
- Dynamic extended folding: modeling the RNA secondary structures during co-transcriptional folding
- A fuzzy model of predicting RNA secondary structure
- Combinatorics of locally optimal RNA secondary structures
- RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
- Symmetric time warping, Boltzmann pair probabilities and functional genomics
- On topological indices for small RNA graphs
- Detecting conserved secondary structures in RNA molecules using constrained structural alignment
- In silico analysis of EST and genomic sequences allowed the prediction of cis-regulatory elements for Entamoeba histolytica mRNA polyadenylation
- Computational identification of novel microRNA homologs in the chimpanzee genome
- Computational identification of 48 potato microRNAs and their targets
- A grammatical approach to RNA-RNA interaction prediction
- On the structure of RNA branching polytopes
- RNA bioinformatics
- Computational identification of microRNAs and their targets
- Rfam
- onechannelgui
- RNAshapes
- tRNAscan-SE
- GenRGenS
- RNAsoft
- RNAfold
- RNAsubopt
- ViennaRNA
- Cofolga
- SCOOP
- UNAFold
- ARTS
- miRBase
- snoSeeker
- CompaRNA
- VARNA
- Assemble
- CentroidAlign
- CENTROIDFOLD
- ASPIC
- ARB
- COFOLD
- CONTRAfold
- AstexViewer
- ASPicDB
- DAFS
- ASTALAVISTA
- DARNED
- Oases
- Exogean
- EMIRGE
- ExpEdit
- IPknot
- jViz.Rna
- RNAmute
- ModeRNA
- Minimus
- PicXAA-R
- PETfold
- PETcofold
- NGS-Trex
- PPfold
- RactIP
- PIntron
- RNAexinv
- RNAfbinv
- RNAalifold
- R-Coffee
- PARalyzer
- PatSearch
- R4RNA
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