Asymptotic number of hairpins of saturated RNA secondary structures

DOI10.1007/s11538-013-9899-1zbMath1284.92026OpenAlexW1985709444WikidataQ35021490 ScholiaQ35021490MaRDI QIDQ2446792

Evangelos Kranakis, Danny Krizanc, Peter Clote

Publication date: 22 April 2014

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-013-9899-1

zbMATH Keywords

algebraic combinatorics

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Uses Software

• Mathematica
• tRNAscan-SE
• UNAFold
• Mfold
• Python
• Pfold
• RNAKinetics
• KineFold

Cites Work

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• Investigation of the Bernoulli model for RNA secondary structures
• Non-Fourier heat conduction in a finite hollow cylinder with periodic surface heat flux
• Perturbation of Yamabe equation on Iwasawa \(N\) groups in presence of symmetry
• Combinatorial analysis of interacting RNA molecules
• Combinatorics of RNA-RNA interaction
• On the page number of RNA secondary structures with pseudoknots
• Asymptotic enumeration of RNA structures with pseudoknots
• On some new sequences generalizing the Catalan and Motzkin numbers
• Combinatorics of RNA secondary structures
• Applying length-dependent stochastic context-free grammars to RNA secondary structure prediction
• Combinatorics of locally optimal RNA secondary structures
• Asymptotic Study of Subcritical Graph Classes

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