Applying length-dependent stochastic context-free grammars to RNA secondary structure prediction

DOI10.3390/A4040223zbMATH Open1461.68100OpenAlexW2097508084MaRDI QIDQ1736487FDOQ1736487

Authors Frank Weinberg, Markus E. Nebel

Publication date 26 March 2019

Published in Algorithms (Search for Journal in Brave)

Full work available at URL https://doi.org/10.3390/a4040223

zbMATH Keywords

RNA secondary structure predictionstochastic context-free grammarlength-dependency

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Grammars and rewriting systems (68Q42)

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Cites work

• scientific article; zbMATH DE number 3639163 (Why is no real title available?)
• Algorithms for Loop Matchings
• Biological Sequence Analysis

Cited in

(7)

• Predicting protein secondary structure using stochastic tree grammars
• Extending stochastic context-free grammars for an application in bioinformatics
• Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar
• Asymptotic number of hairpins of saturated RNA secondary structures
• A grammatical approach to RNA-RNA interaction prediction
• Stochastic \(k\)-tree grammar and its application in biomolecular structure modeling
• Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding

Describes a project that uses

Uses Software

• KineFold

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