Investigation of the Bernoulli model for RNA secondary structures

DOI10.1016/J.BULM.2003.08.015zbMATH Open1334.92314OpenAlexW2013340478WikidataQ80418100 ScholiaQ80418100MaRDI QIDQ253601FDOQ253601

Authors: Markus E. Nebel 

Publication date: 8 March 2016

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.bulm.2003.08.015

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zbMATH Keywords

algorithmic predictionBernoulli modelbulgeshairpinsrandom secondary structures

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cited In (12)

• The expected order of saturated RNA secondary structures
• RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
• Mathematical and biological modelling of RNA secondary structure and its effects on gene expression
• The end-to-end distance of RNA as a randomly self-paired polymer
• Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding
• Expected distance between terminal nucleotides of RNA secondary structures
• Asymptotic number of hairpins of saturated RNA secondary structures
• Large deviations for random trees and the branching of RNA secondary structures
• Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov--Jacobson energy model
• Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy
• Barrier heights between ground states in a model of RNA secondary structure
• Modelling molecular stability in the RNA world

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