Large deviations for random trees and the branching of RNA secondary structures

DOI10.1007/s11538-008-9353-yzbMath1169.92018arXiv0803.3990OpenAlexW1968104166WikidataQ39485077 ScholiaQ39485077MaRDI QIDQ841783

Christine E. Heitsch, Yu. Yu. Bakhtin

Publication date: 18 September 2009

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0803.3990

zbMATH Keywords

Gibbs distributionsvertex degreebranching loopspicornavirusribosome

Mathematics Subject Classification ID

Applications of graph theory (05C90) Random graphs (graph-theoretic aspects) (05C80) Biochemistry, molecular biology (92C40) Large deviations (60F10)

Related Items (4)

Large deviations for random trees ⋮ Algebraic methods in mathematical biology ⋮ Parametric analysis of RNA branching configurations ⋮ Thermodynamic limit for large random trees

Uses Software

• Mfold

Cites Work

• Unnamed Item
• Investigation of the Bernoulli model for RNA secondary structures
• Moments of the Boltzmann distribution for RNA secondary structures
• Entropy, large deviations, and statistical mechanics.
• Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov--Jacobson energy model
• Large deviations for random trees
• Combinatorics of RNA secondary structures

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