Expected distance between terminal nucleotides of RNA secondary structures

DOI10.1007/s00285-011-0467-8zbMath1304.05073OpenAlexW1990215824WikidataQ45030153 ScholiaQ45030153MaRDI QIDQ455765

Jean-Marc Steyaert, Peter Clote, Yann Ponty

Publication date: 22 October 2012

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://hal.inria.fr/inria-00619921/file/paper.pdf

zbMATH Keywords

dynamic programmingRNAasymptotic combinatoricsBoltzmann partition function

Mathematics Subject Classification ID

Dynamic programming in optimal control and differential games (49L20) Dynamic programming (90C39) Enumeration in graph theory (05C30) Biochemistry, molecular biology (92C40)

Related Items (6)

The rainbow spectrum of RNA secondary structures ⋮ RNA secondary structures with given motif specification: combinatorics and algorithms ⋮ Formulae and Asymptotics for Coefficients of Algebraic Functions ⋮ Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding ⋮ ViennaRNA ⋮ The block spectrum of RNA pseudoknot structures

Uses Software

• Rfam
• RNAfold
• RNAsubopt
• Mfold
• VARNA

Cites Work

• Unnamed Item
• Unnamed Item
• On some new sequences generalizing the Catalan and Motzkin numbers
• Combinatorics of RNA secondary structures

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