The rainbow spectrum of RNA secondary structures

DOI10.1007/s11538-018-0411-9zbMath1394.92098arXiv1806.03333OpenAlexW2790566782WikidataQ88063106 ScholiaQ88063106MaRDI QIDQ1670472

Christian M. Reidys, Thomas J. X. Li

Publication date: 5 September 2018

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1806.03333

zbMATH Keywords

rainbowgaparcgenerating functionsingularity analysislength spectrumsecondary structure

Mathematics Subject Classification ID

Exact enumeration problems, generating functions (05A15) Protein sequences, DNA sequences (92D20)

Related Items (2)

Improving RNA secondary structure prediction via state inference with deep recurrent neural networks ⋮ The block spectrum of RNA pseudoknot structures

Uses Software

• ViennaRNA
• RNAfold
• RNAsubopt
• PseudoViewer3

Cites Work

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• Expected distance between terminal nucleotides of RNA secondary structures
• Sparse RNA folding: time and space efficient algorithms
• RNA secondary structures and their prediction
• On the decomposition of \(k\)-noncrossing RNA structures
• Rapid dynamic programming algorithms for RNA secondary structure
• RNA secondary structure: a complete mathematical analysis
• On some new sequences generalizing the Catalan and Motzkin numbers
• Combinatorics of RNA secondary structures
• Spaces of RNA secondary structures
• Linear trees and RNA secondary structure
• Irreducibility in RNA structures
• On Finding All Suboptimal Foldings of an RNA Molecule
• A Study of Accessible Motifs and RNA Folding Complexity
• Computation of Generating Functions for Biological Molecules
• Combinatorics of RNA Hairpins and Cloverleaves

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