RNA bioinformatics
DOI10.1007/978-1-4939-2291-8zbMATH Open1318.92003OpenAlexW4234444708WikidataQ60325210 ScholiaQ60325210MaRDI QIDQ2259130FDOQ2259130
Authors:
Publication date: 27 February 2015
Published in: Methods in Molecular Biology (Search for Journal in Brave)
Full work available at URL: http://www.springer.com/us/book/9781493922901
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sequence alignmentalternative splicingassemblymiRNARNA secondary structuremultiple alignmentRNA-RNA interactionmotif discovery3D structureRNAseqantagomirartificial RNA moleculeASPicDBAStalavistae-DNA meta-barcodingediting siteExpEditmetatranscriptomemiRNA spongeNGS-Trexpost-transcriptional RNA editingRFAMRIPseq, ViennaRNA web serviceRNA tertiary structureRNAseq workflowUTR regulatory element
Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to biology (92-06) General biology and biomathematics (92B05) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)
Cited In (7)
- Regulatory RNAs. Basics, methods and applications
- Bioinformatics and RNA
- Deep sequencing data analysis
- Bioinformatics for high throughput sequencing
- RNA sequence, structure, and function: computational and bioinformatic methods
- Computational methods in noncoding RNA research
- MATHT: a web server for comprehensive transcriptome data analysis
Uses Software
- R
- STAR
- Bioconductor
- Rfam
- edgeR
- RNAshapes
- onechannelgui
- BaySeq
- ViennaRNA
- EMBOSS
- ClustalW
- Mfold
- KEGG
- Clustal X
- VARNA
- CompaRNA
- Galaxy
- FastQC
- Infernal
- Oases
- SOAPdenovo
- RNAmute
- RNAexinv
- RNAfbinv
- RNAalifold
- CONTRAfold
- Rnaz
- CentroidAlign
- RactIP
- COFOLD
- PicXAA-R
- CENTROIDFOLD
- IPknot
- DAFS
- PETfold
- PETcofold
- PPfold
- RNAG
- R-Coffee
- RNAspa
- RNASTAR
- RNAstructure
- PseudoViewer3
- jViz.Rna
- Assemble
- R-CHIE
- R4RNA
- RILogo
- R2R
- RNA2D3D
- ModeRNA
- RNAplex
- RSeQC
- SeqMap
- SHRiMP
- ASPIC
- PIntron
- Exogean
- REDItools
- NGS-Trex
- SortMeRNA
- ARB
- TagCleaner
- EMIRGE
- Minimus
- TopHat
- RAST
- FragGeneScan
- RSEM
- EBSeq
- RIPSeeker
- PARalyzer
- DARNED
- ExpEdit
- NGS QC Toolkit
- PatSearch
- WAR
- SCOOP
- AstexViewer
- BioMart
- ASPicDB
- PolyA_DB
- BaCelLo
- SPEPlip
- PredGPI
- ASTALAVISTA
- OptiRNAi
- OligoWalk
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