Bioinformatics. Volume II: structure, function, and applications

DOI10.1007/978-1-4939-6613-4zbMath1384.92002OpenAlexW2810222224MaRDI QIDQ1691857

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Publication date: 25 January 2018

Published in: Methods in Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-1-4939-6613-4

zbMATH Keywords

clusteringdata miningquantitative trait lociparameterised algorithmsgene networkdrug discoverymetabolic pathwaygene order3-D computational modelling of proteinsantibody repertoirebiomarker identificationcancer module identificationcell signalling pathwaycomputational diagnosisgene homologygenome-wide association data (GWAS data)genome-wide interaction networkslong non-coding RNAsoptimal features setparamagnetic NMR dataphylogenetic profileproteomic dataset

Mathematics Subject Classification ID

Collections of articles of miscellaneous specific interest (00B15) Medical applications (general) (92C50) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08) Research exposition (monographs, survey articles) pertaining to biology (92-02) Systems biology, networks (92C42)

Uses Software

• R
• Bioconductor
• PLINK
• Rfam
• Rnamotif
• edgeR
• igraph
• MCMCglmm
• MAFFT
• minet
• ViennaRNA
• GenABEL
• TASSEL
• SynTReN
• SCARPA
• UNAFold
• QNet
• KEGG
• OpenNLP
• MENDEL
• BLAT
• Rnaz
• TopHat
• SMART
• ARACNE
• HHpred
• PSI-BLAST
• BioGRID
• FPV
• VANTED
• R/qtl
• Dendroscope
• IntAct
• PANTHER
• lncRNAdb
• CIRCUS
• TreeWiz
• BioMiner
• MetaCrop
• Gravisto
• INDDGO
• WhatsHap
• Numbat
• PARAssign
• Pfam
• COMPASS
• MG-RAST
• Mercator
• MAVID
• LocARNAscan
• Rnall
• RNASurface
• starBase
• CARNA
• GraphClust
• RNACluster
• NoFold
• RNAstrand
• OpenDMAP
• GeneWays
• MedScan
• OSCAR4
• ChemSpot
• LINNAEUS
• GLOGS
• MASTOR
• GCTA
• FFBSKAT
• Postgwas
• RAREMETAL
• icoshift
• ChEMBL
• BindingDB
• PubChem
• pRESTO
• IgRepertoireConstructor
• IgBLAST
• HyPhy
• iHMMune-align
• Ab-origin
• SoDA2
• Decombinator
• IgTree
• QAPgrid

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