Bioconductor
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swMATH4205MaRDI QIDQ16389FDOQ16389
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Cited In (only showing first 100 items - show all)
- Integrative correlation: properties and relation to canonical correlations
- Four papers on contemporary software design strategies for statistical methodologists
- Object-oriented programming, functional programming and \texttt{R}
- Scalable genomics with \texttt{R} and bioconductor
- A cross-validation based estimation of the proportion of true null hypotheses
- A Bayesian mixture model for chromatin interaction data
- Flexible mixture modeling via the multivariate \(t\) distribution with the Box-Cox transformation: an alternative to the skew-\(t\) distribution
- On Gene Ranking Using Replicated Microarray Time Course Data
- Strong approximations of level exceedences related to multiple hypothesis testing
- Nonparametric false discovery rate control for identifying simultaneous signals
- Two-Stage Procedures for High-Dimensional Data
- \texttt{MLML2R}: an R package for maximum likelihood estimation of DNA methylation and hydroxymethylation proportions
- Assessing genome-wide significance for the detection of differentially methylated regions
- Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
- Maximum likelihood inference for mixtures of skew Student-\(t\)-normal distributions through practical EM-type algorithms
- Ridge estimation of inverse covariance matrices from high-dimensional data
- An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
- A hybrid algorithm for the DNA sequencing problem
- Gene Expression Array Exploration Using $\mathcal{K}$ -Formal Concept Analysis
- Sample size calculations for designing clinical proteomic profiling studies using mass spectrometry
- On-line changepoint detection and parameter estimation with application to genomic data
- Data science vs. statistics: two cultures?
- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- PICS: Probabilistic Inference for ChIP-seq
- Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data
- A Beginner's Guide to R
- More powerful tests for sparse high-dimensional covariances matrices
- Multiple hypothesis testing and clustering with mixtures of non-central \(t\)-distributions applied in microarray data analysis
- Data mining techniques for the life sciences
- Statistical genomics. Methods and protocols
- A two-sample test for high-dimensional data with applications to gene-set testing
- Multiple testing procedures with applications to genomics.
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
- Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R
- An iterative algorithm for fitting nonconvex penalized generalized linear models with grouped predictors
- Adaptive Gibbs samplers and related MCMC methods
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Simple estimators of false discovery rates given as few as one or two \(p\)-values without strong parametric assumptions
- Correlation tests for high-dimensional data using extended cross-data-matrix methodology
- Estimating the Null Distribution to Adjust Observed Confidence Levels for Genome-Scale Screening
- Multiple Testing with the Structure-Adaptive Benjamini–Hochberg Algorithm
- Title not available (Why is that?)
- Title not available (Why is that?)
- Batch Effects Correction with Unknown Subtypes
- Linear latent variable models: the lava-package
- Seamless R and C++ Integration with Rcpp
- A Statistical Framework to Infer Functional Gene Relationships From Biologically Interrelated Microarray Experiments
- Title not available (Why is that?)
- AAPL: assessing association between p‐value lists
- Supervised Detection of Conserved Motifs in DNA Sequences with Cosmo
- Dose-Response Analysis Using R
- HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
- Advances in integrative statistics for logic programming
- Multiple tests of association with biological annotation metadata
- Caching code chunks in dynamic documents. The weaver package
- Statistical Analysis of Network Data with R
- Interacting with local and remote data repositories using the stashR package
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Classification and clustering of sequencing data using a Poisson model
- Resampling‐Based Empirical Bayes Multiple Testing Procedures for Controlling Generalized Tail Probability and Expected Value Error Rates: Focus on the False Discovery Rate and Simulation Study
- Efficient design and analysis of two colour factorial microarray experiments
- Gaga: a parsimonious and flexible model for differential expression analysis
- Modeling microbial abundances and dysbiosis with beta-binomial regression
- Projection Pursuit Based on Gaussian Mixtures and Evolutionary Algorithms
- Laplace approximated EM microarray analysis: an empirical Bayes approach for comparative microarray experiments
- Node sampling for protein complex estimation in bait-prey graphs
- Boosting algorithms: regularization, prediction and model fitting
- The potential and perils of preprocessing: building new foundations
- Empirical characterization of random forest variable importance measures
- Parameter Estimation for the Exponential-Normal Convolution Model for Background Correction of Affymetrix GeneChip Data
- Comparing segmentation methods for genome annotation based on RNA-seq data
- Cancer outlier differential gene expression detection
- Modified linear discriminant analysis approaches for classification of high-dimensional microarray data
- MATHT: a web server for comprehensive transcriptome data analysis
- Asymptotic normality for inference on multisample, high-dimensional mean vectors under mild conditions
- A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments
- Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates
- On computing maximum likelihood estimates for the negative binomial distribution
- Test-statistic correlation and data-row correlation
- A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
- Identifying atypically expressed chromosome regions using RNA-Seq data
- Computational cell biology. Methods and protocols
- Refining cellular pathway models using an ensemble of heterogeneous data sources
- Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
- An empirical Bayes change-point model for transcriptome time-course data
- Dynamic adaptive procedures that control the false discovery rate
- Confidence distributions and empirical Bayes posterior distributions unified as distributions of evidential support
- A Statistical Framework for Hypothesis Testing in Real Data Comparison Studies
- Identifying intergenerational patterns of correlated methylation sites
- A practical guide to big data
- Dynamical properties of feedback signalling in B lymphopoiesis: a mathematical modelling approach
- Interpoint distance tests for high-dimensional comparison studies
- miRNA–target gene regulatory networks: A Bayesian integrative approach to biomarker selection with application to kidney cancer
- Partial least squares classification for high dimensional data using the PCOUT algorithm
- Projected tests for high-dimensional covariance matrices
- minPtest: a resampling based gene region-level testing procedure for genetic case-control studies
- RNA bioinformatics
- HDBRR: a statistical package for high-dimensional Bayesian ridge regression without MCMC
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