Cited in
(only showing first 100 items - show all)- Yanagi: transcript segment library construction for RNA-seq quantification
- abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation
- Bayesian estimation of differential transcript usage from RNA-seq data
- A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments
- STAR
- edgeR
- onechannelgui
- casper
- DEseq
- SCOOP
- PerMallows
- CompaRNA
- HTSeq
- VARNA
- Assemble
- CentroidAlign
- CENTROIDFOLD
- ASPIC
- ARB
- COFOLD
- AstexViewer
- ASPicDB
- DAFS
- ASTALAVISTA
- DARNED
- Oases
- Exogean
- EMIRGE
- EBSeq
- ExpEdit
- IPknot
- Enrichr
- jViz.Rna
- RNAmute
- Minimus
- PicXAA-R
- PETfold
- PETcofold
- NGS-Trex
- PPfold
- RactIP
- PIntron
- RNAexinv
- RNAfbinv
- RNAalifold
- R-Coffee
- PARalyzer
- R-CHIE
- PatSearch
- R4RNA
- OligoWalk
- R2R
- RNAG
- OptiRNAi
- RNAspa
- RNASTAR
- RILogo
- RNA2D3D
- PolyA_DB
- RNAplex
- featureCounts
- REDItools
- RSeQC
- PredGPI
- SeqMap
- RIPSeeker
- SortMeRNA
- TagCleaner
- SPEPlip
- TopHat
- WAR
- GENCODE
- DRIMSeq
- BayesMallows
- DiffCoEx
- VarScan
- MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
- SNVMix
- MapSplice
- Salmon
- RapMap
- abSNP
- GlfMultiples
- Yanagi
- Sniper
- MITIE
- PERMORY
- WemIQ
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- zinbwave
- SIHR
- iClusterPlus
- FSCseq
- NB.MClust
- Robust Correlation Toolbox
- StringTie
- hpcNMF
- RNA bioinformatics
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
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