Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
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Publication:2233190
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Cites work
- 10.1162/153244303321897735
- A classification EM algorithm for clustering and two stochastic versions
- Adjusting batch effects in microarray expression data using empirical Bayes methods
- Choosing starting values for the EM algorithm for getting the highest likelihood in multivariate Gaussian mixture models
- Cluster analysis: unsupervised learning via supervised learning with a non-convex penalty
- Convergence of a block coordinate descent method for nondifferentiable minimization
- Coordinate descent algorithms for lasso penalized regression
- Estimating the dimension of a model
- Estimating the number of clusters in a data set via the gap statistic
- Experiments in projection and clustering by simulated annealing
- scientific article; zbMATH DE number 4205776 (Why is no real title available?)
- scientific article; zbMATH DE number 4048925 (Why is no real title available?)
- scientific article; zbMATH DE number 1222290 (Why is no real title available?)
- Information theoretic measures for clusterings comparison: variants, properties, normalization and correction for chance
- Maximum likelihood estimation via the ECM algorithm: A general framework
- Numerical Optimization
- On the rate of convergence of the ECM algorithm
- Pathwise coordinate optimization
- Penalized model-based clustering with application to variable selection
- Regularization and Variable Selection Via the Elastic Net
- Ridge Regression: Biased Estimation for Nonorthogonal Problems
- Sparse canonical correlation analysis with application to genomic data integration
- The EM Algorithm and Extensions, 2E
- Variable selection in the Cox regression model with covariates missing at random
- Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
Cited in
(6)- A nested unsupervised approach to identifying novel molecular subtypes
- A sparse negative binomial classifier with covariate adjustment for RNA-seq data
- Dirichlet process mixture models for unsupervised clustering of symptoms in Parkinson's disease
- PUseqClust: a clustering analysis method for RNA-seq data
- Conditional mean embedding and optimal feature selection via positive definite kernels
- Adaptive sufficient sparse clustering by controlling false discovery
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