DESeq2
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Tuning parameter selection for a penalized estimator of species richness
- An empirical Bayes change-point model for transcriptome time-course data
- Improved outcome prediction across data sources through robust parameter tuning
- Maximum rank reproducibility: a nonparametric approach to assessing reproducibility in replicate experiments
- Optimal false discovery rate control for large scale multiple testing with auxiliary information
- Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data
- Rejoinder for “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data”
- Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Bioconductor
- gcrma
- mixfdr
- edgeR
- WGCNA
- SAM
- DEGseq
- BaySeq
- DEseq
- limma
- RUVseq
- maSigPro
- gvlma
- leapp
- PoiClaClu
- QuasiSeq
- BMSS
- Phyloseq
- MADAM
- miRSystem
- samr
- ShrinkBayes
- TopKLists
- svaseq
- Voom
- DOSE
- EBSeq
- DAVID
- RSEM
- NBC
- recount
- qvalue
- zCompositions
- UpSetR
- deconvolveR
- adaptiveGPCA
- Scotty
- PICNIC
- EmpDiff
- REBayes
- FABIA
- Minfi
- compcodeR
- DEXUS
- SC3
- structSSI
- MetamicrobiomeR
- MicrobiomeAnalyst
- smoothfdr
- IUTA
- ePCA
- rSeqDiff
- brunnermunzel
- CHIME
- clusterProfiler
- AdaPT
- adaptMT
- GSEA-P
- CAMERA
- MAST
- MultiCluster
- Pvalue Weighting
- gprege
- QUBIC
- CIDR
- UNDO
- topGO
- DivNet
- ZIFA
- TCGAbiolinks
- UPARSE
- USEARCH
- powsimR
- SNN-Cliq
- SimSeq
- GPSeq
- splatter
- CorBin
- ChAMP
- FastDMA
- PINCAGE
- WemIQ
- zinbwave
- ggtree
- CountClust
- GuidedSparseKmeans
- iClusterPlus
- BPSC
- smashr
- DeconRNASeq
- FSCseq
This page was built for software: DESeq2
