DESeq2
From MaRDI portal
Cited in
(only showing first 100 items - show all)- DESMAN
- DDL
- MIMIX
- DeepPINK
- ptmixed
- glmGamPoi
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Bioconductor
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- mixfdr
- gcrma
- edgeR
- WGCNA
- DEGseq
- SAM
- Estimating cellular redundancy in networks of genetic expression
- Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis
- Optimal false discovery rate control for large scale multiple testing with auxiliary information
- \texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples
- Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression
- BaySeq
- DEseq
- RUVseq
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- An empirical Bayes change-point model for transcriptome time-course data
- Improved outcome prediction across data sources through robust parameter tuning
- limma
- A compositional model to assess expression changes from single-cell RNA-seq data
- maSigPro
- gvlma
- leapp
- Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data
- PoiClaClu
- QuasiSeq
- BMSS
- Phyloseq
- TopKLists
- MADAM
- miRSystem
- samr
- ShrinkBayes
- Voom
- svaseq
- Discrimination of attractors with noisy nodes in Boolean networks
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- DOSE
- RSEM
- EBSeq
- DAVID
- recount
- NBC
- deconvolveR
- adaptiveGPCA
- Scotty
- PICNIC
- REBayes
- EmpDiff
- Interactive Visualization of Hierarchically Structured Data
- qvalue
- FABIA
- Minfi
- DEXUS
- compcodeR
- SC3
- structSSI
- zCompositions
- MicrobiomeAnalyst
- MetamicrobiomeR
- smoothfdr
- IUTA
- rSeqDiff
- ePCA
- brunnermunzel
- CHIME
- clusterProfiler
- GSEA-P
- AdaPT
- adaptMT
- CAMERA
- MAST
- MultiCluster
- Pvalue Weighting
- gprege
- QUBIC
- UNDO
- topGO
- CIDR
- ZIFA
- TCGAbiolinks
- USEARCH
- UPARSE
- DivNet
- splatter
- Maximum rank reproducibility: a nonparametric approach to assessing reproducibility in replicate experiments
- powsimR
- SNN-Cliq
- SimSeq
- WemIQ
- GPSeq
- CorBin
This page was built for software: DESeq2
