gcrma
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Gcrma
Cited in
(only showing first 100 items - show all)- BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
- On Gene Ranking Using Replicated Microarray Time Course Data
- Robust gene expression index
- An empirical Bayes change-point model for transcriptome time-course data
- PQN and DQN: algorithms for expression microarrays
- Estimation of selected parameters
- Nested nonnegative cone analysis
- An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- JavaStat: a Java/R-based statistical computing environment
- A statistical perspective on the challenges in molecular microbial biology
- Deriving and comparing the distribution for the number of false positives in single step methods to control \(k\)-FWER
- Data science vs. statistics: two cultures?
- Correlation tests for high-dimensional data using extended cross-data-matrix methodology
- Interactive Visualization of Hierarchically Structured Data
- Evaluation of Laplace distribution-based ANOVA models applied to microarray data
- The Gibbs-plaid biclustering model
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- Gene expression array exploration using \(\mathcal{K}\)-formal concept analysis
- Projected tests for high-dimensional covariance matrices
- Neyman's truncation test for two-sample means under high dimensional setting
- Two-stage procedures for high-dimensional data
- Error Distribution for Gene Expression Data
- Sample size reassessment for a two-stage design controlling the false discovery rate
- Asymptotic normality for inference on multisample, high-dimensional mean vectors under mild conditions
- Latent variable modeling paradigms for genotype-trait association studies
- Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
- A mixture factor model with applications to microarray data
- The potential and perils of preprocessing: building new foundations
- Removing technical variability in RNA-seq data using conditional quantile normalization
- Projection Pursuit Based on Gaussian Mixtures and Evolutionary Algorithms
- Statistical inference based on robust low-rank data matrix approximation
- An Enhanced Quantile Approach for Assessing Differential Gene Expressions
- Multiple tests of association with biological annotation metadata
- A two-sample test for high-dimensional data with applications to gene-set testing
- Context-Specific Nested Effects Models
- A statistical framework for the analysis of microarray probe-level data
- Concept Explorer
- MEtest
- DESMAN
- Interpoint distance tests for high-dimensional comparison studies
- Applied Statistical Genetics with R
- A Model-Based Background Adjustment for Oligonucleotide Expression Arrays
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Modified linear discriminant analysis approaches for classification of high-dimensional microarray data
- DESeq2
- Functional Regression Analysis of Fluorescence Curves
- Empirical characterization of random forest variable importance measures
- MEACA
- Clustering non-linear interactions in factor analysis
- Bayesian factor models for the detection of coherent patterns in gene expression data
- Inference on high-dimensional mean vectors with fewer observations than the dimension
- Significance tests to identify regulated proteins based on a large number of small samples
- A look at multiplicity through misclassification
- Bayesian testing of many hypotheses \(\times \) many genes: a study of sleep apnea
- Partition clustering of high dimensional low sample size data based on \(p\)-values
- Test-statistic correlation and data-row correlation
- An iterative algorithm for fitting nonconvex penalized generalized linear models with grouped predictors
- Book review of: R. Gentleman et al., Bioinformatics and computational biology solutions using R and bioconductor
- A note on oligonucleotide expression values not being normally distributed
- Comparing large covariance matrices under weak conditions on the dependence structure and its application to gene clustering
- Computational cell biology. Methods and protocols
- An efficient and flexible multiplicity adjustment for chi-square endpoints
- Laplace approximated EM microarray analysis: an empirical Bayes approach for comparative microarray experiments
- MATHT: a web server for comprehensive transcriptome data analysis
- Gaga: a parsimonious and flexible model for differential expression analysis
- Frozen robust multiarray analysis (fRMA)
- MergeMaid
- Bioconductor
- beadarray
- gaga
- mixfdr
- oligo
- vsn
- BGX
- JGR
- edgeR
- Simpleaffy
- fdrtool
- someMTP
- Scanalyze
- multitest
- affy
- dChip
- EBarrays
- multtest
- marrayClasses
- nlpden
- BaySeq
- DEseq
- affypdnn
- affycomp
- affyPLM
- hopach
- JavaStat
- limma
- SIMAGE
- GOstat
- affyPara
- arrayQualityMetrics
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