affy

swMATH8345MaRDI QIDQ20354FDOQ20354

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Official website: https://www.bioconductor.org/packages/release/bioc/html/affy.html

Cited In (75)

• Distribution modeling and simulation of gene expression data
• Bioinformatics and computational biology solutions using R and Bioconductor.
• A computational approach inspired by simulated annealing to study the stability of protein interaction networks in cancer and neurological disorders
• Estimating a common covariance matrix for network meta-analysis of gene expression datasets in diffuse large B-cell lymphoma
• Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
• An empirical Bayes change-point model for transcriptome time-course data
• Clinical Trial Data Analysis Using R and SAS, Second Edition
• Frozen robust multiarray analysis (fRMA)
• Problems in gene clustering based on gene expression data
• Accurate Ranking of Differentially Expressed Genes by a Distribution-Free Shrinkage Approach
• Discrimination and scoring using small sets of genes for two-sample microarray data
• A flexible approximate likelihood ratio test for detecting differential expression in microarray data
• Enhanced Quantile Normalization of Microarray Data to Reduce Loss of Information in Gene Expression Profiles
• Bioconductor
• Algorithm 611
• beadarray
• gcrma
• oligo
• vsn
• Simpleaffy
• CGH-Plotter
• mathStatica
• multtest
• affypdnn
• affycomp
• affyPLM
• hopach
• limma
• RUVseq
• SIMAGE
• QSARdata
• affyPara
• arrayQualityMetrics
• idr
• IsoGene
• gRapHD
• Affycomp III
• breastCancerVDX
• Hot
• GEOquery
• AICcmodavg
• jpeg
• A permutation test motivated by microarray data analysis
• BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
• Puma
• g Profiler
• ChIPOTle
• FastAnnotator
• MISSEL
• Transcriptator
• GMCM
• CorrT
• correlateR
• HIPPIE
• ArrayExpress
• GEST
• ACE-it
• panp
• fRMA
• spkTools
• aroma.affymetrix
• MADS
• marray
• sma
• HPMIXED
• In defense of the indefensible: a very naïve approach to high-dimensional inference
• Bayesian factor models for the detection of coherent patterns in gene expression data
• seeker
• Empirical study for the agreement between statistical methods in quality assessment and control of microarray data
• A mixed integer programming-based global optimization framework for analyzing gene expression data
• Network-based sparse Bayesian classification
• Model simplification for supervised classification of metabolic networks
• Multiclass classification of sarcomas using pathway based feature selection method
• A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus
• Statistical analysis of next generation sequencing data

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