Empirical study for the agreement between statistical methods in quality assessment and control of microarray data

DOI10.1007/S00180-010-0216-2MaRDI QIDQ2513345zbMATH OpenOpenAlexFDO

Authors Markus Schmidberger, Esmeralda Vicedo, Ulrich Mansmann

Publication date 28 January 2015

Published in Computational Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00180-010-0216-2

zbMATH Keywords

bioconductorempirical studymicroarrayquality assessment and control

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08)

Recommendations

• Statistical metrics for quality assessment of high-density tiling array data
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• Statistical analysis of microarray data: a Bayesian approach

Cites work

• Bioinformatics and computational biology solutions using R and Bioconductor.
• scientific article; zbMATH DE number 401323 (Why is no real title available?)
• Statistical Methods for Rates and Proportions
• The Measurement of Observer Agreement for Categorical Data

Cited in

(5)

• Quality control of platinum spike dataset by probe-level mixed models
• Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models
• Statistical metrics for quality assessment of high-density tiling array data
• A Comparison of Methods to Control Type I Errors in Microarray Studies
• Statistically appraising process quality of affinity isolation experiments

Describes a project that uses

Uses Software

• multicore
• affy
• ArrayExpress
• Simpleaffy
• R
• gcrma
• affyPara
• arrayQualityMetrics
• Bioconductor

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