Quality control of platinum spike dataset by probe-level mixed models

DOI10.1016/J.MBS.2013.11.004MaRDI QIDQ2452785zbMATH OpenOpenAlexWikidataFDO

Authors Tatsiana Khamiakova, Ziv Shkedy, Dhammika Amaratunga, Willem Talloen, Hinrich Göhlmann, Luc Bijnens, Adetayo Kasim

Publication date 5 June 2014

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2013.11.004

zbMATH Keywords

linear mixed modelsgene expression analysisbenchmark dataprobe level data

Mathematics Subject Classification ID

Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• A systematic statistical linear modeling approach to oligonucleotide array experiments
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• Informative or noninformative calls for gene expression: a latent variable approach
• Linear mixed-effects models using R. A step-by-step approach
• Mixed-Effects Models in S and S-PLUS

Describes a project that uses

Uses Software

• GenXHC
• Affycomp III
• VariBench
• affycomp
• nlmeU
• S-PLUS
• R

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