Quality control of platinum spike dataset by probe-level mixed models

DOI10.1016/J.MBS.2013.11.004zbMATH Open1314.92054OpenAlexW2063457940WikidataQ44645844 ScholiaQ44645844MaRDI QIDQ2452785FDOQ2452785

Authors: Tatsiana Khamiakova, Ziv Shkedy, Dhammika Amaratunga, Willem Talloen, Hinrich Göhlmann, Luc Bijnens, Adetayo Kasim 

Publication date: 5 June 2014

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2013.11.004

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zbMATH Keywords

linear mixed modelsgene expression analysisbenchmark dataprobe level data

Mathematics Subject Classification ID

Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

Cites Work

• Linear mixed-effects models using R. A step-by-step approach
• Mixed-Effects Models in S and S-PLUS
• Title not available (Why is that?)
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• A systematic statistical linear modeling approach to oligonucleotide array experiments
• Informative or noninformative calls for gene expression: a latent variable approach

Uses Software

• R
• S-PLUS
• nlmeU
• affycomp
• VariBench
• Affycomp III
• GenXHC

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