Mixed-Effects Models in S and S-PLUS

DOI10.1007/b98882zbMath0953.62065OpenAlexW4299625508MaRDI QIDQ4490329

Publication date: 13 July 2000

Published in: Statistics and Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/b98882

zbMATH Keywords

longitudinal data repeated measures fitting grouped data blocked designs fixed and random effects multilevel data analysis of variance and covariance linear and nonlinear mixed-effects models within-group correlations

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to statistics (62-04) Linear regression; mixed models (62J05) Linear inference, regression (62J99) General nonlinear regression (62J02) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to statistics (62-01) Analysis of variance and covariance (ANOVA) (62J10)

Related Items

The BLUPs are not best when it comes to bootstrapping, Parameter estimation of two-level nonlinear mixed effects models using first order conditional linearization and the EM algorithm, Alternatives to the usual likelihood ratio test in mixed linear models, A review on asymptotic inference in stochastic differential equations with mixed effects, Detection of outliers in longitudinal count data via overdispersion, Randomization-based models for multitiered experiments. I: A chain of randomizations, Structure identification in panel data analysis, A new mathematical model for combining growth and energy intake in animals: the case of the growing pig, Retail store scheduling for profit, Bidimensional random effect estimation in mixed stochastic differential model, Gilmour's approach to mixed and stochastic restricted ridge predictions in linear mixed models, A finite mixture of nonlinear random coefficient models for continuous repeated measures data, Randomly truncated nonlinear mixed-effects models, Efficient two-dimensional smoothing with \(P\)-spline ANOVA mixed models and nested bases, Pharmacokinetically guided optimum adaptive dose selection in early phase clinical trials, Fiducial generalized \(p\)-values for testing zero-variance components in linear mixed-effects models, Linear mixed models with marginally symmetric nonparametric random effects, A flexible approach to inference in semiparametric regression models with correlated errors using Gaussian processes, Fast symmetric additive covariance smoothing, Penalized likelihood ratio tests for repeated measurement models, Frequentist model averaging for linear mixed-effects models, A general skew-\(t\) mixed model that allows different degrees of freedom for random effects and error distributions, Forecasting in nonlinear univariate time series using penalized splines, Estimating mixed-effects differential equation models, Variable selection for generalized linear mixed models by \(L_1\)-penalized estimation, Lasso-type estimators for semiparametric nonlinear mixed-effects models estimation, The allometric quarter-power scaling model and its applicability to grand fir and \textit{eucalyptus} trees, Continuous covariate frailty models for censored and truncated clustered data, Principal components regression and \(r-k\) class predictions in linear mixed models, Generalized degrees of freedom and adaptive model selection in linear mixed-effects models, Inference in semi-parametric spline mixed models for longitudinal data, Parameter estimation of complex mixed models based on meta-model approach, Generalized linear mixed models: a review and some extensions, Residual analysis of linear mixed models using a simulation approach, Linear mixed model with Laplace distribution (LLMM), Bayesian experimental design for a toxicokinetic-toxicodynamic model, Calibrated Bayes, for statistics in general, and missing data in particular, Discussion of ``Calibrated Bayes, for statistics in general, and missing data in particular by R. Little, Mixed modeling with whole genome data, Detecting social transmission in networks, A comparison of estimation methods for multilevel logistic models, Modeling item-item similarities for personalized recommendations on Yahoo! front page, Model comparison with composite likelihood information criteria, Robustness of the linear mixed effects model to error distribution assumptions and the consequences for genome-wide association studies, Fitting mixed-effects models when data are left truncated, A distribution-free test of parallelism for two-sample repeated measurements, Systematic deviation in smooth mixed models for multi-level longitudinal data, Modelling escalation in crime seriousness: a latent variable approach, Adaptive estimation of marginal random-effects densities in linear mixed-effects models, Nonparametric estimation in a mixed-effect Ornstein-Uhlenbeck model, An efficient computing strategy for prediction in mixed linear models, An approximate likelihood approach to nonlinear mixed effects models via spline approximation, Maximum likelihood estimation in nonlinear mixed effects models, Linear latent variable models: the lava-package, Comparison of nonparametric methods in nonlinear mixed effects models, Improved testing inference in mixed linear models, Impact of unknown covariance structures in semiparametric models for longitudinal data: an application to Wisconsin diabetes data, A procedure for robust fitting in nonlinear regression, Small area estimation with spatial similarity, Semiparametric transformation models with Bayesian P-splines, Drawing conclusions from choice response time models: a tutorial using the linear ballistic accumulator, Model-based boosting in R: a hands-on tutorial using the R package mboost, A nonlinear mixed effects directional model for the estimation of the rotation axes of the human ankle, Estimating common parameters in heterogeneous random effects models, Time delay embedding increases estimation precision of models of intraindividual variability, Parameter estimation and inference in the linear mixed model, A better (Bayesian) interval estimate for within-subject designs, Variable selection in discrete survival models including heterogeneity, A note on transformed likelihood approach in linear dynamic panel models, Boosted multivariate trees for longitudinal data, Asymptotic distribution of likelihood ratio test statistics for variance components in nonlinear mixed effects models, Double Machine Learning for Partially Linear Mixed-Effects Models with Repeated Measurements, Longitudinal concordance correlation function based on variance components: an application in fruit color analysis, Heavy-tailed longitudinal data modeling using copulas, Recent advances in mathematical modeling and statistical analysis of exocytosis in endocrine cells, Structured additive distributional regression for analysing landings per unit effort in fisheries research, Likelihood ratio tests for variance components in linear mixed models, Modeling long-term longitudinal HIV dynamics with application to an AIDS clinical study, On composite marginal likelihoods, Robustness of parameter estimation procedures in multilevel models when random effects are MEP distributed, Generalized partially linear mixed-effects models incorporating mismeasured covariates, Functional data analysis in an operator-based mixed-model framework, Automatic approximation of the marginal likelihood in non-Gaussian hierarchical models, Improved inference on a scalar fixed effect of interest in nonlinear mixed-effects models, Model selection and mixed-effects modeling of HIV infection dynamics, Estimating reducible stochastic differential equations by conversion to a least-squares problem, Estimation in nonlinear mixed-effects models using heavy-tailed distributions, Straightforward intermediate rank tensor product smoothing in mixed models, On the relative efficiency of a monotone parameter curve estimator in a functional nonlinear model, Efficient hybrid EM for linear and nonlinear mixed effects models with censored response, MEMSS, Model-based clustering for longitudinal data, Size and power of tests for a zero random effect variance or polynomial regression in additive and linear mixed models, Long-term HIV dynamic models incorporating drug adherence and resistance to treatment for prediction of virological responses, A random effects four-part model, with application to correlated medical costs, Mixed-effects Tobit joint models for longitudinal data with skewness, detection limits, and measurement errors, Quantile regression for nonlinear mixed effects models: a likelihood based perspective, Model selection in linear mixed models, Restricted likelihood ratio tests for linearity in scalar-on-function regression, Lymphangiogenesis and carcinoma in the uterine cervix: joint and hierarchical models for random cluster sizes and continuous outcomes, Bayesian inference using a noninformative prior for linear Gaussian random coefficient regression with inhomogeneous within-class variances, Influence diagnostics in linear and nonlinear mixed-effects models with censored data, A monotone frequentist measure of evidence for testing variance components in linear mixed models, Linear mixed models and penalized least squares, Split-Plot Designs for Robotic Serial Dilution Assays, Heterogeneous Capture-Recapture Models with Covariates: A Partial Likelihood Approach for Closed Populations, A length-based hierarchical model of brown trout (Salmo trutta fario) growth and production, Empirical likelihood method for longitudinal data generated from unequally-spaced Lèvy processes, Some Alternatives to Asymptotic Tests for the Analysis of Pharmacogenetic Data Using Nonlinear Mixed Effects Models, Influence on tests with focus on linear models, Smoothing and mixed models, A note on P-spline additive models with correlated errors, Evaluating class and school effects on the joint student achievements in different subjects: a bivariate semiparametric model with random coefficients, A note on smoothing parameter selection for penalized spline smoothing, Additive mixed models with approximate Dirichlet process mixtures: the EM approach, Estimation for High-Dimensional Linear Mixed-Effects Models Using ℓ1-Penalization, On exact inference in linear models with two variance-covariance components, Simultaneous Confidence Bands for Linear Regression with Covariates Constrained in Intervals, Conditional functional clustering for longitudinal data with heterogeneous nonlinear patterns, Censored mixed-effects models for irregularly observed repeated measures with applications to HIV viral loads, Cheap talk and cooperation in Stackelberg games, A sparse hierarchical Bayesian model for detecting relevant antigenic sites in virus evolution, Estimation and incommutativity in mixed models, A statistical test for detecting parent-of-origin effects when parental information is missing, An empirical comparison and characterisation of nine popular clustering methods, Efficient global optimization of constrained mixed variable problems, Modelling and estimation of nonlinear quantile regression with clustered data, A regression approach to ROC surface, with applications to Alzheimer's disease, Meeting the assumptions of inverse-intensity weighting for longitudinal data subject to irregular follow-up: suggestions for the design and analysis of clinic-based cohort studies, Optimal obstacle placement with disambiguations, A semiparametric regression model for paired longitudinal outcomes with application in childhood blood pressure development, Focused model selection for linear mixed models with an application to whale ecology, An improved measurement error model for analyzing unreplicated method comparison data under asymmetric heavy-tailed distributions, Practical identifiability of HIV dynamics models, Generalized linear models with clustered data: fixed and random effects models, Penalized regression with individual deviance effects, Identifiability of linear mixed effects models, Appropriate covariance-specification via penalties for penalized splines in mixed models for longitudinal data, Parameter estimation and treatment optimization in a stochastic model for immunotherapy of cancer, Nonparametric estimation for stochastic differential equations with random effects, Traditional and rank-based tests for ordered alternatives in a cluster correlated model, A note on BIC in mixed-effects models, Quality control of platinum spike dataset by probe-level mixed models, New adaptive strategies for nonparametric estimation in linear mixed models, Modified SCAD penalty for constrained variable selection problems, Different methods for handling incomplete longitudinal binary outcome due to missing at random dropout, Accounting for estimation uncertainty and shrinkage in Bayesian within-subject intervals: a comment on Nathoo, Kilshaw, and Masson (2018), Joint Modeling of the Clinical Progression and of the Biomarkers' Dynamics Using a Mechanistic Model, What if versus probabilistic scenarios: a neuroscientific analysis, Approximate inferences for nonlinear mixed effects models with scale mixtures of skew-normal distributions, Maximum likelihood estimation of stochastic differential equations with random effects driven by fractional Brownian motion, \(R\)-optimal designs for individual prediction in random coefficient regression models, Geometric characterization of \(D\)-optimal designs for random coefficient regression models, Bias reduction in the two-stage method for degradation data analysis, Modeling and testing treated tumor growth using cubic smoothing splines, Modeling regional economic dynamics: spatial dependence, spatial heterogeneity and nonlinearities, A tolerance interval approach for assessment of agreement in method comparison studies with repeated measurements, Mixed model prediction and small area estimation. (With comments of P. Hall, D. Morales, C. N. Morris, J. N. K. Rao, and J. L. Eltinge), Three-step estimation in linear mixed models with skew-\(t\) distributions, Bayesian mixed-effects model for the analysis of a series of FRAP images, Nonlinear nonparametric mixed-effects models for unsupervised classification, Local linear mixed effect models -- model specification and interpretation in a biological context, A resource selection model for analyzing pseudoreplicated data due to grouping behavior of animals, A mixed model for investigating a population of asymptotic growth curves using restricted \(B\)-splines, Formulating mixed models for experiments, including longitudinal experiments, Multilevel model prediction, R Version 2.1.0, Approximate estimation in generalized linear mixed models with applications to the Rasch model, Statistical issues in studies of the long-term effects of air pollution: the Southern California Children's Health Study (with comments and rejoinder), Bayesian Analysis of Curves Shape Variation Through Registration and Regression, Parameter estimation of the linear phase correction model by hierarchical linear models, Statistics for Model Calibration, Additive and multiplicative effects network models, Joint Models for Longitudinal and Time-to-Event Data: with Applications in R. By D. Rizopoulus. Boca Raton, Florida: Chapman and Hall/CRC Press. 2012. 275 pages. UK£49.99 (hardback). ISBN 978-1-4398-7286-4., Exact Simultaneous Confidence Bands for Quadratic and Cubic Polynomial Regression with Applications in Dose Response Study, What Level of Statistical Model Should We Use in Small Area Estimation?, Multiple imputation for multilevel data with continuous and binary variables, On longitudinal moving average model for prediction of subpopulation total, Bayesian inference in nonlinear mixed-effects models using normal independent distributions, From zero to sixty: Calibrating real-time responses, Determination of the Unknown Age at First Capture of Western Rock Lobsters (Panulims cygnus) by Random Effects Model, A Test of Linkage for Complex Discrete and Continuous Traits in Nuclear Families, The \(\mathrm{r}\)-\(\mathrm{d}\) class predictions in linear mixed models, Fisher scoring for crossed factor linear mixed models, On drawbacks of least squares Lehmann-Scheffé estimation of variance components, The generalized equivalence of regularization and min-max robustification in linear mixed models, \(D\)-optimal designs for hierarchical linear models with intraclass covariance structure, Estimating variances in time series kriging using convex optimization and empirical BLUPs, A penalized spline estimator for fixed effects panel data models, Non-concave penalization in linear mixed-effect models and regularized selection of fixed effects, Estimating heterogeneity variances to select a random effects model, Co-clustering of time-dependent data via the shape invariant model, Inference in Gaussian state-space models with mixed effects for multiple epidemic dynamics, Modeling antitumor activity by using a non-linear mixed-effects model, Joint mixture quantile regressions and time-to-event analysis, Multiple changepoint detection in categorical data streams, Multi-level block designs for comparative experiments, Multilevel simultaneous equation model: a novel specification and estimation approach, Responder feelings in a three-player three-option ultimatum game: affective determinants of rejection behavior, A Bayesian approach to model individual differences and to partition individuals: case studies in growth and learning curves, Partial Least Squares for Heterogeneous Data, A maximum likelihood estimator for left-truncated lifetimes based on probabilistic prior information about time of occurrence, Nonparametric Method for Estimating the Distribution of Time to Failure of Engineering Materials, Nonlinear mixed-effects models with scale mixture of skew-normal distributions, Generalized Rank-Based Estimates for Linear Models with Cluster Correlated Data, Consistent Fixed-Effects Selection in Ultra-high dimensional Linear Mixed Models with Error-Covariate Endogeneity, Self Modeling with Flexible, Random Time Transformations, Likelihood Ratio Tests in Linear Mixed Models with One Variance Component, Statistical Method for Analysis of the Disease Curve in Animals with Experimental Autoimmune Encephalomyelitis, Low‐Rank Scale‐Invariant Tensor Product Smooths for Generalized Additive Mixed Models, Unnamed Item, Unnamed Item, A Multilevel Model for Continuous Time Population Estimation, Streamlined variational inference for higher level group-specific curve models, Backfitting Random Varying-Coefficient Models with Time-Dependent Smoothing Covariates, Diagnostics for repeated measurements in nonlinear mixed effects models, Local influence of nonlinear mixed effects model based on M-estimation, Nonparametric estimation of random effects densities in a linear mixed-effects model with Fourier-oscillating noise density, Segmented mixed models with random changepoints: a maximum likelihood approach with application to treatment for depression study, Stochastic restricted Liu predictors in linear mixed models, Investigation of covariance structures in modelling longitudinal ordinal responses with skew normal random effect, In Praise of Simplicity not Mathematistry! Ten Simple Powerful Ideas for the Statistical Scientist, A semiparametric nonlinear mixed model approach to phase I profile monitoring, A Monte Carlo study of REML and robust rank-based analyses for the random intercept mixed model, Estimation of the linear mixed integrated Ornstein–Uhlenbeck model, Multi-level models can benefit from minimizing higher-order variations: an illustration using child malnutrition data, Testing for autocorrelation and random-effects in nonlinear mixed effects models based on M-estimation, Parameter Estimation Using Unidentified Individual Data in Individual Based Models, A Bayesian approach in differential equation dynamic models incorporating clinical factors and covariates, Nonparametric bootstrapping for hierarchical data, Influence diagnostics in heteroscedastic and/or autoregressive nonlinear elliptical models for correlated data, Practical modeling strategies for unbalanced longitudinal data analysis, A joint marginalized multilevel model for longitudinal outcomes, Degradation data analysis for samples under unequal operating conditions: a case study on train wheels, Parameter estimation of nonlinear mixed-effects models using first-order conditional linearization and the EM algorithm, Segmental modeling of changing immunologic response for CD4 data with skewness, missingness and dropout, A skew-normal random effects model for longitudinal ordinal categorical responses with missing data, Statistical models for disaggregation and reaggregation of natural gas consumption data, On elliptical multilevel models, Testing of homogeneity of variance and autocorrelation coefficients of nonlinear mixed models with AR(1) errors based on M-estimation, Bivariate multilevel models for the analysis of mathematics and reading pupils' achievements, Multiple-index varying-coefficient models for longitudinal data, A shared parameter model of longitudinal measurements and survival time with heterogeneous random-effects distribution, Selection of terms in random coefficient regression models, A multivariate single-index model for longitudinal data, Flexible multivariate nonlinear models for bioequivalence problems, Group Kernels for Gaussian Process Metamodels with Categorical Inputs, Computer Intensive Methods for Mixed-effects Models, Fast and Accurate Binary Response Mixed Model Analysis via Expectation Propagation, Hierarchical Normalized Completely Random Measures to Cluster Grouped Data, Robust integer-valued designs for linear random intercept models, Combining Multiple Comparisons and Modeling Techniques in Dose‐Response Studies, An adaptation of pseudo-score confidence interval method for linear mixed models, Summarizing EC50 estimates from multiple dose‐response experiments: A comparison of a meta‐analysis strategy to a mixed‐effects model approach, Statistical methods for HIV dynamic studies in AIDS clinical trials, Low‐Rank Smoothing Splines on Complicated Domains, Restricted Likelihood Ratio Lack-of-Fit Tests Using Mixed Spline Models, Prediction in Multilevel Logistic Regression, Adaptive Inference for Multi-Stage Survey Data, MODEL SELECTION FOR PENALIZED SPLINE SMOOTHING USING AKAIKE INFORMATION CRITERIA, A Modified Pseudolikelihood Approach for Analysis of Longitudinal Data, Bootstrap tests for variance components in generalized linear mixed models, On the Measurement and Analysis of Asymmetry with Applications to Facial Modelling, A Comparison of Procedures to Correct for Base-Line Differences in the Analysis of Continuous Longitudinal Data: A Case-Study, Random covariances and mixed-effects models for imputing multivariate multilevel continuous data, Maximum Likelihood Estimation in Dynamical Models of HIV, Just‐Identified Versus Overidentified Two‐Level Hierarchical Linear Models with Missing Data, Scaled von Mises–Fisher Distributions and Regression Models for Paleomagnetic Directional Data, Non-penalty shrinkage estimation of random effect models for longitudinal data with AR(1) errors, Discriminant Analysis for Longitudinal Data with Multiple Continuous Responses and Possibly Missing Data, Trellis display for modeling data from designed experiments, Model‐based clustering of regression time series data via APECM—an AECM algorithm sung to an even faster beat, Adaptive fitting of linear mixed-effects models with correlated random effects, Fast Stable Direct Fitting and Smoothness Selection for Generalized Additive Models, Regression tree-based diagnostics for linear multilevel models, Effective simultaneous confidence bands for repeated measurements in linear mixed-effect models, A hitchhiker's view on spatial statistics and spatial econometrics for lattice data, Longitudinal mixed-effects models for latent cognitive function, STREAMLINED SOLUTIONS TO MULTILEVEL SPARSE MATRIX PROBLEMS, Several nonparametric and semiparametric approaches to linear mixed model regression, Assessment of Agreement under Nonstandard Conditions Using Regression Models for Mean and Variance, Comparison of different computational implementations on fitting generalized linear mixed-effects models for repeated count measures, Pairwise estimation of multivariate longitudinal outcomes in a Bayesian setting with extensions to the joint model, Simulation studies comparing fixed effect and mixed models in data sets with multiple measurements in individual sampling units, Estimating marginal properties of quantitative real‐time PCR data using nonlinear mixed models, Maximum likelihood estimation of nonlinear mixed-effects models with crossed random effects by combining first-order conditional linearization and sequential quadratic programming, Unnamed Item, Unnamed Item, Eliciting Risk Preferences and Elasticity of Substitution, Unnamed Item, Assessing Nonsuperiority, Noninferiority, or Equivalence When Comparing Two Regression Models Over a Restricted Covariate Region, Optimal tests for random effects in linear mixed models, Shape‐Invariant Modeling of Circadian Rhythms with Random Effects and Smoothing Spline ANOVA Decompositions, Mixed-effects modelling for crossed and nested data: an analysis of dengue fever in the state of Goiás, Brazil, Improvement of mixed predictors in linear mixed models, An elastic net penalized small area model combining unit- and area-level data for regional hypertension prevalence estimation, Multivariate Multilevel Nonlinear Mixed Effects Models for Timber Yield Predictions, Geoadditive Models, A Hierarchical Modelling Approach for Measuring Reliability of and Agreement Between Two Types Of Magnetic Field Dosimeter, Most Likely Separation of Intensity and Warping Effects in Image Registration, Multilevel multinomial logit regression model with random effects: application to flash EuroBarometer euro survey data, High-Dimensional Factor Regression for Heterogeneous Subpopulations, A Generalized Levene's Scale Test for Variance Heterogeneity in the Presence of Sample Correlation and Group Uncertainty, Longitudinal model for a dose-finding study for a rare disease treatment, Regularization in dynamic random‐intercepts models for analysis of longitudinal data, Uniformly valid inference based on the Lasso in linear mixed models, Time-to-Event Analysis with Unknown Time Origins via Longitudinal Biomarker Registration, Bayesian bivariate bent-cable model for longitudinal data, Statistical modeling of changes in relative sea level in Maine during the Holocene Era, Partial least square based approaches for high-dimensional linear mixed models, Mixed-effect models with trees, A multilevel structured latent curve model for disaggregating student and school contributions to learning, Predictions of machine learning with mixed-effects in analyzing longitudinal data under model misspecification, Inference for High-Dimensional Linear Mixed-Effects Models: A Quasi-Likelihood Approach, Asymptotics for EBLUPs: Nested Error Regression Models, Robust estimation in partially nonlinear models, Fast inference for robust nonlinear mixed-effects models, Inference in nonorthogonal mixed models, Bayesian multilevel logistic regression models: a case study applied to the results of two questionnaires administered to university students, Correct specification of design matrices in linear mixed effects models: tests with graphical representation, A two-stage approach for Bayesian joint models: reducing complexity while maintaining accuracy, Longitudinal modeling of age-dependent latent traits with generalized additive latent and mixed models, Bayesian model selection: application to the adjustment of fundamental physical constants, Diagnostics for a two-stage joint survival model, Clustering of trajectories with mixed effects classification model: Inference taking into account classification uncertainties

Uses Software