sma

MaRDI QIDQ51848swMATHFDO

Official website https://github.com/cran/sma/blob/master/DESCRIPTION

Source code repository https://github.com/cran/sma

Cited in

(89)

• Extracting gene regulation information for cancer classification
• Transformations, background estimation, and process effects in the statistical analysis of microarrays
• Signaling perturbations induced by invading \textit{H. pylori} proteins in the host epithelial cells: a mathematical modeling approach
• A statistical methodology to select covariates in high-dimensional data under dependence. Application to the classification of genetic profiles in oncology
• Class prediction and gene selection for DNA microarrays using regularized sliced inverse regression
• A two-stage empirical Bayes method for identifying differentially expressed genes
• Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data
• New normalization methods using support vector machine quantile regression approach in microarray analysis
• A systematic statistical linear modeling approach to oligonucleotide array experiments
• Analyzing factorial designed microarray experiments
• Expression profiles in the progression of ductal carcinoma in the breast
• MAOSA: A new procedure for detection of differential gene expression
• Statistical challenges in functional genomics. (With comments and a rejoinder).
• Simultaneous rank tests for detecting differentially expressed genes
• A statistical framework for the analysis of microarray probe-level data
• Multiple hypothesis testing in microarray experiments.
• Hadamard matrix methods in identifying differentially expressed genes from microarray experi\-ments
• Intensity-dependent normalization in microarray analysis: a note of concern
• Balancing type one and two errors in multiple testing for differential expression of genes
• Optimal feature selection for sparse linear discriminant analysis and its applications in gene expression data
• A perceptually optimised bivariate visualisation scheme for high-dimensional fold-change data
• Determining and analyzing differentially expressed genes from cDNA microarray experiments with complementary designs
• MergeMaid
• gaga
• gcrma
• vsn
• MVR
• BGX
• EDGE
• Scanalyze
• DEGseq
• affy
• EBarrays
• marrayClasses
• marrayInput
• marrayNorm
• marrayPlots
• MAANOVA
• affydata
• affyPLM
• limma
• normalp
• SIMAGE
• FAMT
• ibr
• lpc
• Mutoss
• siggenes
• RankGene
• Affycomp III
• Affymetrix
• ClassComparison
• GSA
• superpc
• VarMixt
• MAPPFinder
• maigesPack
• TileMap
• iGA
• GoSurfer
• CLIFF
• rcal
• Multi-group cancer outlier differential gene expression detection
• Identifying differentially expressed genes in dye-swapped microarray experiments of small sample size
• A multivariate empirical Bayes statistic for replicated microarray time course data
• armada
• Spatial Correlation of Gene Expression Measures in Tissue Microarray Core Analysis
• Statistical analysis of C‐DNA microarray data for sample clustering and gene identification
• A permutation test motivated by microarray data analysis
• Segmenting microarray images using a contour-based method
• Evaluation of false discovery rate and power via sample size in microarray studies
• Thresholding rules for recovering a sparse signal from microarray experiments
• Privacy preserving feature selection and multiclass classification for horizontally distributed data
• A new class of mixture models for differential gene expression in DNA microarray data
• Joint adaptive mean-variance regularization and variance stabilization of high dimensional data
• Simultaneous confidence intervals for differential gene expressions
• Gaga: a parsimonious and flexible model for differential expression analysis
• MatrixLMnet
• Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments
• A statistical method for measuring activation of gene regulatory networks
• Selecting features in microarray classification using roc curves
• Power and stability comparisons of multiple testing procedures with false discovery rate control
• A look at multiplicity through misclassification
• BiTrinA
• An optimal choice of window width for LOWESS normalization of microarray data
• Sparse matrix linear models for structured high-throughput data
• A statistical framework for testing functional categories in microarray data
• Statistical analysis of the Shapley value for microarray games
• ChIP‐chip: Data, Model, and Analysis

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