Analyzing factorial designed microarray experiments

DOI10.1016/J.JMVA.2004.02.004MaRDI QIDQ1876978zbMATH OpenOpenAlexFDO

Authors Alexander Miron, Faisal M. Merchant, Arden Miller, Penelope L. Miron, J. Dirk Iglehart, Robert Gentleman, Denise M. Scholtens

Publication date 16 August 2004

Published in Journal of Multivariate Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jmva.2004.02.004

zbMATH Keywords

Gene expressionLinear modelExperimental designGene selectionEstrogen target

Mathematics Subject Classification ID

Linear regression; mixed models (62J05) Applications of statistics to biology and medical sciences; meta analysis (62P10) Factorial statistical designs (62K15) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Recommendations

• Design Considerations for Efficient and Effective Microarray Studies
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• scientific article; zbMATH DE number 1750188

Cites work

• scientific article; zbMATH DE number 1750184 (Why is no real title available?)
• scientific article; zbMATH DE number 1750188 (Why is no real title available?)
• Bayesian Models for Gene Expression With DNA Microarray Data
• Experimental design for gene expression microarrays
• Factorial and time course designs for cDNA microarray experiments
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• Multiple hypothesis testing in microarray experiments.
• Resistant and Test-Based Outlier Rejection: Effects on Gaussian One- and Two-Sample Inference
• Statistical modeling of large microarray data sets to identify stimulus-response profiles
• The control of the false discovery rate in multiple testing under dependency.

Cited in

(7)

• Bayesian modeling of factorial time-course data with applications to a bone aging gene expression study
• Estimating the proportion of true null hypotheses using the pattern of observed \(p\)-values
• Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression
• The changing focus of microarray analysis
• The Quest for Biological Significance
• Design Considerations for Efficient and Effective Microarray Studies
• Highly efficient factorial designs for cDNA microarray experiments: use of approximate theory together with a step-up step-down procedure

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