Exploration of distributional models for a novel intensity-dependent normalization procedure in censored gene expression data

DOI10.1016/J.CSDA.2008.11.026MaRDI QIDQ961384zbMATH OpenOpenAlexWikidataFDO

Authors Nicola Lama, Patrizia Boracchi, Elia Biganzoli

Publication date 30 March 2010

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2008.11.026

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Recommendations

• NORMALITY OF GENE EXPRESSION REVISITED
• Variance stabilization and robust normalization for microarray gene expression data
• A Two-Way Semilinear Model for Normalization and Analysis of cDNA Microarray Data
• A Comparison of Parametric and Nonparametric Methods for Normalising cDNA Microarray Data
• Intensity-dependent normalization in microarray analysis: a note of concern

Cites work

• A new approach to intensity-dependent normalization of two-channel microarrays
• A practical guide to splines
• Algorithm 811: NDA
• Asymptotic results for goodness-of-fit statistics with unknown parameters
• Error Distribution for Gene Expression Data
• Estimating the dimension of a model
• Experimental design for gene expression microarrays
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• scientific article; zbMATH DE number 3619635 (Why is no real title available?)
• scientific article; zbMATH DE number 1750184 (Why is no real title available?)
• scientific article; zbMATH DE number 3444596 (Why is no real title available?)
• scientific article; zbMATH DE number 2202354 (Why is no real title available?)
• scientific article; zbMATH DE number 3350935 (Why is no real title available?)
• Locally-weighted regression: an approach to regression analysis by local fitting
• Parameter estimation for the calibration and variance stabilization of microarray data
• Pre-validation and inference in microarrays
• Tests of Fit for the Laplace Distribution, with Applications
• Transformations for cDNA Microarray Data

Cited in

(3)

• RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing nanostring nCounter data
• NORMALITY OF GENE EXPRESSION REVISITED
• Editorial: Statistical genetics \& statistical genomics: where biology, epistemology, statistics, and computation collide

Describes a project that uses

Uses Software

• marrayNorm
• marrayPlots
• affydata
• marrayInput
• PNEW
• R
• Bioconductor
• marrayClasses
• normalp
• superpc
• vsn
• NDA
• sma

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