RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing nanostring nCounter data

DOI10.1214/19-AOAS1249zbMath1433.62306arXiv1910.13632OpenAlexW3104283543MaRDI QIDQ2281208

Yang Xie, Ximing Tang, Qiwei Li, Gaoxiang Jia, Wei Lu, Xinlei Wang, Ignacio Wistuba

Publication date: 19 December 2019

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1910.13632

zbMATH Keywords

normalizationBayesian hierarchical modelingrandom coefficients regressioncontrol probesFFPEhousekeeping gene

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Nonparametric estimation (62G05) General nonlinear regression (62J02) Genetics and epigenetics (92D10)

Related Items (1)

RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing nanostring nCounter data

Uses Software

• RUVseq
• BayesDA
• Voom
• NanoStringNorm

Cites Work

• Unnamed Item
• The jackknife estimate of variance
• RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing nanostring nCounter data
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• An analysis of variance test for normality (complete samples)
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data

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