Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments

DOI10.1016/J.JSPI.2004.06.037MaRDI QIDQ1765642zbMATH OpenOpenAlexFDO

Authors Robert D. Gibbons, D. R. Cox, Dennis R. Grayson, Rajiv P. Sharma, Dulal K. Bhaumik, John M. Davis

Publication date 23 February 2005

Published in Journal of Statistical Planning and Inference (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jspi.2004.06.037

zbMATH Keywords

MicroarraySimultaneous prediction intervalscolon cancerMultiple comparisonsMolecular geneticsStatistical genetics

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Sequential statistical analysis (62L10) Biochemistry, molecular biology (92C40) Order statistics; empirical distribution functions (62G30)

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Cites work

• [article; zbMATH DE number 3167454 (Why is no real title available?)]
• [article; zbMATH DE number 5673017 (Why is no real title available?)]
• [article; zbMATH DE number 1255541 (Why is no real title available?)]
• [article; zbMATH DE number 720689 (Why is no real title available?)]
• [article; zbMATH DE number 1750184 (Why is no real title available?)]
• [article; zbMATH DE number 1357299 (Why is no real title available?)]
• [article; zbMATH DE number 837323 (Why is no real title available?)]
• [article; zbMATH DE number 3366343 (Why is no real title available?)]
• Bayesian Models for Gene Expression With DNA Microarray Data
• Empirical Bayes Analysis of a Microarray Experiment
• Experimental design for gene expression microarrays
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Multi-criterion optimization for genetic network modeling
• Significance analysis of microarrays applied to the ionizing radiation response

Cited in

(10)

• An improved nonparametric approach for detecting differentially expressed genes with replicated microarray data
• Sequential analysis for microarray data based on sensitivity and meta-analysis
• Inference on the Gamma Distribution
• Pre-validation and inference in microarrays
• Sequential Design for Microarray Experiments
• A renewed approach to the nonparametric analysis of replicated microarray experiments
• Regression as a method to predict copy numbers in comparative genomic hybridization studies on bacteria
• scientific article; zbMATH DE number 5290463 (Why is no real title available?)
• Determining and analyzing differentially expressed genes from cDNA microarray experiments with complementary designs
• An order estimation based approach to identify response genes for microarray time course data

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