Empirical Bayes Analysis of a Microarray Experiment
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Cited in
(only showing first 100 items - show all)- Cluster analysis using multivariate normal mixture models to detect differential gene expression with microarray data
- A clarifying comparison of methods for controlling the false discovery rate
- A new multiple testing method in the dependent case
- A semi-parametric approach for mixture models: application to local false discovery rate estimation
- More powerful control of the false discovery rate under dependence
- A note on multiple testing for composite null hypotheses
- Kernel Knockoffs Selection for Nonparametric Additive Models
- Adjusting batch effects in microarray expression data using empirical Bayes methods
- False Discovery Rate Control Under General Dependence By Symmetrized Data Aggregation
- A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
- Resampling-based multiple testing for microarray data analysis (With comments)
- Robbins, empirical Bayes and microarrays
- Compound decision theory and empirical Bayes methods
- The positive false discovery rate: A Bayesian interpretation and the \(q\)-value
- Statistical challenges in functional genomics. (With comments and a rejoinder).
- Multiple hypothesis testing in microarray experiments.
- Generalized estimating equations by considering additive terms for analyzing time-course gene sets data
- A high-dimensional two-sample test for the mean using random subspaces
- Adjusted regularization in latent graphical models: application to multiple-neuron spike count data
- Adjusted regularization of cortical covariance
- Estimation of the proportion of true null hypotheses in high-dimensional data under dependence
- A parametric model to estimate the proportion from true null using a distribution for \(p\)-values
- Adjusting background noise in cluster analyses of longitudinal data
- Ridge estimation of inverse covariance matrices from high-dimensional data
- Bayesian nonparametric multiple testing
- Simultaneous estimation based on empirical likelihood and general maximum likelihood estimation
- A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference
- An extension of the \(K\)-means algorithm to clustering skewed data
- Sequential prediction bounds for identifying differentially expressed genes in replicated microarray experiments
- Decision theory results for one-sided multiple comparison procedures
- A new perspective on robust \(M\)-estimation: finite sample theory and applications to dependence-adjusted multiple testing
- A stochastic process approach to false discovery control.
- FDR-controlling stepwise procedures and their false negatives rates
- Optimal significance analysis of microarray data in a class of tests whose null statistic can be constructed
- False discovery rate control with multivariate p-values
- The false discovery rate for statistical pattern recognition
- Optimal weighting for false discovery rate control
- Multiple hypothesis testing on composite nulls using constrained \(p\)-values
- Distributions associated with simultaneous multiple hypothesis testing
- On the development of a local FDR-based approach to testing two-way classified hypotheses
- Semi-supervised multiple testing
- Local false discovery rate based methods for multiple testing of one-way classified hypotheses
- Where to find needles in a haystack?
- Null-free false discovery rate control using decoy permutations
- A simple yet efficient method of local false discovery rate estimation designed for genome-wide association data analysis
- Optimal false discovery rate control for large scale multiple testing with auxiliary information
- False discovery rate control with unknown null distribution: is it possible to mimic the oracle?
- Empirical Bayes cumulative \(\ell\)-value multiple testing procedure for sparse sequences
- Powerful multiple testing of paired null hypotheses using a latent graph model
- Bayesian local false discovery rate for sparse count data with application to the discovery of hotspots in protein domains
- Detection of two-way outliers in multivariate data and application to cheating detection in educational tests
- Strong consistency and asymptotic normality for quantities related to the Benjamini-Hochberg false discovery rate procedure
- Detecting differentially expressed genes by relative entropy
- Frequentist properties of Bayesian multiplicity control for multiple testing of normal means
- A comprehensive error rate for multiple testing
- On spike and slab empirical Bayes multiple testing
- An empirical Bayes change-point model for transcriptome time-course data
- An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
- False discovery variance reduction in large scale simultaneous hypothesis tests
- Adaptive nonparametric estimation of a component density in a two-class mixture model
- Discovering focal regions of slightly-aggregated sparse signals
- Bayesian variable selection in clustering high-dimensional data with substructure
- Unsupervised empirical Bayesian multiple testing with external covariates
- The split sample permutation \(t\)-tests
- Uniformly consistently estimating the proportion of false null hypotheses via Lebesgue-Stieltjes integral equations
- Empirical Bayes analysis of RNA sequencing experiments with auxiliary information
- Dynamic adaptive procedures that control the false discovery rate
- Inequalities for the false discovery rate (FDR) under dependence
- Simple estimators of false discovery rates given as few as one or two \(p\)-values without strong parametric assumptions
- Bayesian tests for composite alternative hypotheses in cross-tabulated data
- New procedures controlling the false discovery proportion via Romano-Wolf's heuristic
- Probabilistic inference for multiple testing
- An exploration of aspects of Bayesian multiple testing
- Hierarchical Bayes variable selection and microarray experiments
- Effects of statistical dependence on multiple testing under a hidden Markov model
- Power-enhanced multiple decision functions controlling family-wise error and false discovery rates
- Exact calculations for false discovery proportion with application to least favorable configura\-tions
- Compound \(p\)-value statistics for multiple testing procedures
- High-dimensional influence measure
- An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data
- Adaptive linear step-up multiple testing procedure with the bias-reduced estimator
- Size, power and false discovery rates
- On the performance of FDR control: constraints and a partial solution
- A statistical analysis of memory CD8 T cell differentiation: An application of a hierarchical state space model to a short time course microarray experiment
- Diverse correlation structures in gene expression data and their utility in improving statistical inference
- Hadamard matrix methods in identifying differentially expressed genes from microarray experi\-ments
- A new class of mixture models for differential gene expression in DNA microarray data
- Properties of higher criticism under strong dependence
- False discovery rate analysis of brain diffusion direction maps
- False discovery and false nondiscovery rates in single-step multiple testing procedures
- The false discovery rate: a variable selection perspective
- Adapting to unknown sparsity by controlling the false discovery rate
- Higher criticism for large-scale inference, especially for rare and weak effects
- New multiple testing method under no dependency assumption, with application to multiple comparisons problem
- Covariate-adjusted multiple testing in genome-wide association studies via factorial hidden Markov models
- False discovery rate for functional data
- Significance analysis of microarrays applied to the ionizing radiation response
- Supporting informationa robust method for large-scale multiple hypotheses testing
- Spatial Boundary Detection for Areal Counts
- A decision-theory approach to interpretable set analysis for high-dimensional data
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