Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
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Publication:4459296
DOI10.2202/1544-6115.1027zbMATH Open1038.62110OpenAlexW2081098333WikidataQ27860758 ScholiaQ27860758MaRDI QIDQ4459296FDOQ4459296
Authors: Gordon K. Smyth 
Publication date: 28 March 2004
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: http://www.bepress.com/sagmb/vol3/iss1/art3/
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Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Empirical decision procedures; empirical Bayes procedures (62C12)
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- Identifying differentially expressed genes in microarray experiments with model-based variance estimation
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- Hierarchical Inverse Gaussian Models and Multiple Testing: Application to Gene Expression Data
- Can matching improve the performance of boosting for identifying important genes in observational studies?
- High dimensional extension of the growth curve model and its application in genetics
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- The changing focus of microarray analysis
- Identification of genomic markers correlated with sensitivity in solid tumors to Dasatinib using sparse principal components
- BOPA: A Bayesian hierarchical model for outlier expression detection
- A mixture factor model with applications to microarray data
- Context-Specific Nested Effects Models
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- Empirical and fully Bayesian approaches for random effects models in microarray data analysis
- Detecting strong signals in gene perturbation experiments: an adaptive approach with power guarantee and FDR control
- Evaluation of Laplace distribution-based ANOVA models applied to microarray data
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- Simultaneous confidence intervals for differential gene expressions
- Improved Small Domain Estimation via Compromise Regression Weights
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
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- Application of skew-normal distribution for detecting differential expression to microRNA data
- Empirical Bayes identication of tumor progression genes from microarray data
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- A Bayesian model averaging approach for observational gene expression studies
- A statistical framework for the analysis of microarray probe-level data
- Estimating the False Discovery Rate Using Nonparametric Deconvolution
- Theory of optimal Bayesian feature filtering
- Robust semiparametric optimal testing procedure for multiple normal means
- Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression
- A semi-parametric approach for mixture models: application to local false discovery rate estimation
- Discrimination and scoring using small sets of genes for two-sample microarray data
- A Hilbert Space Embedding for Distributions
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
- Tilting methods for assessing the influence of components in a classifier
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- Empirical Bayes Estimation of a Sparse Vector of Gene Expression Changes
- Optimal tests shrinking both means and variances applicable to microarray data analysis
- AAPL: assessing association between p‐value lists
- A Bayesian approach for decision making on the identification of genes with different expression levels: an application to Escherichia coli bacterium data
- Comment: ``Microarrays, empirical Bayes and the two-groups model
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- Joint adaptive mean-variance regularization and variance stabilization of high dimensional data
- Empirical Bayes Analysis of a Microarray Experiment
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