A model selection criterion for model-based clustering of annotated gene expression data

DOI10.1515/sagmb-2014-0095zbMath1330.92080WikidataQ31004690 ScholiaQ31004690MaRDI QIDQ5962695

Mélina Gallopin, Florence Jaffrézic, Gilles Celeux, Andrea Rau

Publication date: 16 February 2016

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://hal.inria.fr/hal-01255908/file/2015_Gallopin_SAGMB_1.pdf

zbMATH Keywords

model selection; model-based clustering; functional gene annotation; gene expression data

Mathematics Subject Classification ID

62H30: Classification and discrimination; cluster analysis (statistical aspects)

92B15: General biostatistics

92D10: Genetics and epigenetics

62F07: Statistical ranking and selection procedures

Uses Software

• Bioconductor
• edgeR
• Mixmod
• DEseq
• Rmixmod
• KEGG
• Voom
• MSigDB

Cites Work

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• Enhancing the selection of a model-based clustering with external categorical variables
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments