Cited in
(only showing first 100 items - show all)- Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- Poisson mean vector estimation with nonparametric maximum likelihood estimation and application to protein domain data
- Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- Network modeling in biology: statistical methods for gene and brain networks
- Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
- A statistical perspective on the challenges in molecular microbial biology
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
- Interactive Visualization of Hierarchically Structured Data
- A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- On computing maximum likelihood estimates for the negative binomial distribution
- Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
- A compositional model to assess expression changes from single-cell RNA-seq data
- Statistical calibration of qRT-PCR, microarray and RNA-Seq gene expression data with measurement error models
- Fully Bayesian analysis of allele-specific RNA-seq data
- A parametric model fitting time to first event for overdispersed data: application to time to relapse in multiple sclerosis
- \(p\)-value calibration for multiple testing problems in genomics
- Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
- Tropical sufficient statistics for persistent homology
- Identifying atypically expressed chromosome regions using RNA-Seq data
- BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data
- DADA2
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- CLIFF
- sma
- PLNseq
- Rqc
- Rsamtools
- PeerJS
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- iClusterPlus
- nmfem
- FSCseq
- GENIE3
- NB.MClust
- JDINAC
- VCNet
- SILGGM
- DESMAN
- Two-sample test for sparse high-dimensional multinomial distributions
- Statistical analysis of next generation sequencing data
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- DESeq2
- Estimation of sparse directed acyclic graphs for multivariate counts data
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Estimation and testing of gene expression heterosis
- Beyond support in two-stage variable selection
- A bioequivalence test by the direct comparison of concentration-versus-time curves using local polynomial smoothers
- Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
- clustRviz
- MIMIX
- glmGamPoi
- ZIBBSeqDiscovery
- A two-stage Poisson model for testing RNA-Seq data
- Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data
- Significance tests to identify regulated proteins based on a large number of small samples
- Detecting rare and faint signals via thresholding maximum likelihood estimators
- A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
- Modeling read counts for CNV detection in exome sequencing data
- The NBP negative binomial model for assessing differential gene expression from RNA-Seq
- discordant
- EMDomics
- hpcNMF
- Non parametric Bayesian analysis of the two-sample problem with censoring
- Toward an efficient computation of log-likelihood functions in statistical inference: overdispersed count data clustering
- Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- A finite mixture approach to joint clustering of individuals and multivariate discrete outcomes
- scientific article; zbMATH DE number 7370572 (Why is no real title available?)
- Giotto
- NBLDA
- Some approximation results for Bayesian posteriors that involve the Hurwitz-Lerch zeta distribution
- A model selection criterion for model-based clustering of annotated gene expression data
- Homology cluster differential expression analysis for interspecies mRNA-seq experiments
- A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data
- Classification and clustering of sequencing data using a Poisson model
- MATHT: a web server for comprehensive transcriptome data analysis
- On the estimation of mixtures of Poisson regression models with large number of components
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- \(e\)PCA: high dimensional exponential family PCA
- Bioconductor
- gcrma
- vsn
- edgeR
- SAM
- EDGE
- DEGseq
- RankProd
- MAANOVA
- casper
- corpor
- BaySeq
- EDAseq
- limma
- RUVseq
- BioHMM
This page was built for software: DEseq
