DEseq

swMATH10344MaRDI QIDQ22305FDOQ22305

Author name not available (Why is that?)

Official website: http://www-huber.embl.de/users/anders/DESeq/

Cited In (72)

• Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP
• A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data
• A finite mixture approach to joint clustering of individuals and multivariate discrete outcomes
• Title not available (Why is that?)
• Toward an efficient computation of log-likelihood functions in statistical inference: overdispersed count data clustering
• Modeling overdispersion heterogeneity in differential expression analysis using mixtures
• No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
• Some approximation results for Bayesian posteriors that involve the Hurwitz-Lerch zeta distribution
• Non parametric Bayesian analysis of the two-sample problem with censoring
• A model selection criterion for model-based clustering of annotated gene expression data
• Homology cluster differential expression analysis for interspecies mRNA-seq experiments
• A Bayesian mixture model for chromatin interaction data
• On computing maximum likelihood estimates for the negative binomial distribution
• Statistical calibration of qRT-PCR, microarray and RNA-Seq gene expression data with measurement error models
• Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
• A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
• Identifying atypically expressed chromosome regions using RNA-Seq data
• Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
• Tropical sufficient statistics for persistent homology
• A bioequivalence test by the direct comparison of concentration-versus-time curves using local polynomial smoothers
• Significance tests to identify regulated proteins based on a large number of small samples
• Estimation of sparse directed acyclic graphs for multivariate counts data
• Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
• Fully Bayesian analysis of allele-specific RNA-seq data
• \(p\)-value calibration for multiple testing problems in genomics
• A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
• What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
• Two-sample test for sparse high-dimensional multinomial distributions
• A two-stage Poisson model for testing RNA-Seq data
• Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
• Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
• Detecting rare and faint signals via thresholding maximum likelihood estimators
• Network modeling in biology: statistical methods for gene and brain networks
• Modeling read counts for CNV detection in exome sequencing data
• The NBP negative binomial model for assessing differential gene expression from RNA-Seq
• A parametric model fitting time to first event for overdispersed data: application to time to relapse in multiple sclerosis
• Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
• Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
• Interactive Visualization of Hierarchically Structured Data
• Bioconductor
• Poisson mean vector estimation with nonparametric maximum likelihood estimation and application to protein domain data
• EDGE
• casper
• corpor
• Netsim
• HTSeq
• Galaxy
• featureCounts
• PROPER
• recount
• DGCA
• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
• A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
• GENE-counter
• Scotty
• A compositional model to assess expression changes from single-cell RNA-seq data
• On the estimation of mixtures of Poisson regression models with large number of components
• Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
• Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
• Classification and clustering of sequencing data using a Poisson model
• Estimation and testing of gene expression heterosis
• BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data
• Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
• Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
• A statistical perspective on the challenges in molecular microbial biology
• MATHT: a web server for comprehensive transcriptome data analysis
• \(e\)PCA: high dimensional exponential family PCA
• Statistical analysis of next generation sequencing data
• Beyond support in two-stage variable selection
• An optimal test with maximum average power while controlling FDR with application to RNA-seq data
• A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments
• Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data

This page was built for software: DEseq