Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
DOI10.1007/S13253-015-0226-1zbMATH Open1329.62446OpenAlexW1842080361WikidataQ31031790 ScholiaQ31031790MaRDI QIDQ906078FDOQ906078
Authors: Dan Nettleton, Haibo Liu, Christopher K. Tuggle, Yet Tien Nguyen 
Publication date: 29 January 2016
Published in: Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s13253-015-0226-1
Recommendations
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
Applications of statistics to environmental and related topics (62P12) Protein sequences, DNA sequences (92D20)
Cites Work
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Adaptive and Dynamic Adaptive Procedures for False Discovery Rate Control and Estimation
- A Direct Approach to False Discovery Rates
- Title not available (Why is that?)
- Title not available (Why is that?)
- Small-sample estimation of negative binomial dispersion, with applications to SAGE data
- The NBP negative binomial model for assessing differential gene expression from RNA-Seq
Cited In (5)
- Detection of differentially expressed genes in discrete single‐cell RNA sequencing data using a hurdle model with correlated random effects
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- Homology cluster differential expression analysis for interspecies mRNA-seq experiments
Uses Software
This page was built for publication: Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q906078)
