No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
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Publication:2406178
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Cites work
- Bioconductor
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Fitting Tweedie's Compound Poisson Model to Insurance Claims Data: Dispersion Modelling
- scientific article; zbMATH DE number 3458075 (Why is no real title available?)
- Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
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(15)- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Statistical analysis of next generation sequencing data
- Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
- A Bayesian measurement error model for two-channel cell-based RNAi data with replicates
- Pathway analysis for RNA-seq data using a score-based approach
- Combining single and paired end RNA-seq data for differential expression analyses
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- Lognormality and oscillations in the coverage of high-throughput transcriptomic data towards gene ends
- Removing technical variability in RNA-seq data using conditional quantile normalization
- A two-stage Poisson model for testing RNA-Seq data
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
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