Cited in
(only showing first 100 items - show all)- A model selection criterion for model-based clustering of annotated gene expression data
- IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses
- A Bayesian mixture model for chromatin interaction data
- Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
- On computing maximum likelihood estimates for the negative binomial distribution
- Nonparametric false discovery rate control for identifying simultaneous signals
- A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
- Identifying atypically expressed chromosome regions using RNA-Seq data
- Computational cell biology. Methods and protocols
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Statistical analysis of microbiome data with R
- An empirical Bayes change-point model for transcriptome time-course data
- Statistical genomics. Methods and protocols
- Removing technical variability in RNA-seq data using conditional quantile normalization
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data
- Modeling association in microbial communities with clique loglinear models
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- RNA bioinformatics
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Modeling read counts for CNV detection in exome sequencing data
- STAR
- Bioconductor
- Rfam
- vegan
- beadarray
- gcrma
- oligo
- BiocManager
- SAM
- DEGseq
- CNAmet
- RankProd
- affy
- minet
- ARSyN
- casper
- corpor
- GUniFrac
- BaySeq
- DEseq
- EDAseq
- limma
- RUVseq
- AUGUSTUS
- BioHMM
- maSigPro
- PoiClaClu
- QuasiSeq
- GATK
- MDM
- SynTReN
- BMSS
- BioNet
- Netsim
- HmmSeq
- Phyloseq
- KEGG
- ShrinkBayes
- Biostrings
- miRBase
- svaseq
- Voom
- ShortRead
- DOSE
- HTSeq
- Galaxy
- FastQC
- DiffSplice
- DoubleExpSeq
- BioMart
- EBSeq
- BSgenome
- BEDTools
- DAVID
- NGS QC Toolkit
- Rnaz
- GEOquery
- featureCounts
- GSVA
- GenomeGraphs
- inSilicoDb
- RSEM
- Gviz
- PROPER
- recount
- Rtracklayer
- ROAST
- Rsubread
- Trimmomatic
- bc3net
- TopHat
- qvalue
- sva
- UpSetR
- deconvolveR
- csaw
- CNV-seq
- BayesPeak
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