edgeR
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Related Items (54)
IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses ⋮ Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks ⋮ Statistical analysis of microbiome data with R ⋮ Statistical genomics. Methods and protocols ⋮ Bayesian analysis of RNA-Seq data using a family of negative binomial models ⋮ A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data ⋮ Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping ⋮ Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression ⋮ A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data ⋮ Unnamed Item ⋮ A sparse negative binomial classifier with covariate adjustment for RNA-seq data ⋮ Bioinformatics for High Throughput Sequencing ⋮ Contrastive latent variable modeling with application to case-control sequencing experiments ⋮ Structured hierarchical models for probabilistic inference from perturbation screening data ⋮ Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes ⋮ Bayesian estimation of differential transcript usage from RNA-seq data ⋮ No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data ⋮ Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis ⋮ Bioinformatics. Volume II: structure, function, and applications ⋮ Random forests in count data modelling: an analysis of the influence of data features and overdispersion on regression performance ⋮ A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus ⋮ Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes ⋮ Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis ⋮ MATHT: a web server for comprehensive transcriptome data analysis ⋮ Modeling read counts for CNV detection in exome sequencing data ⋮ Computational cell biology. Methods and protocols ⋮ Identifying atypically expressed chromosome regions using RNA-Seq data ⋮ On computing maximum likelihood estimates for the negative binomial distribution ⋮ Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis ⋮ Comparing segmentation methods for genome annotation based on RNA-seq data ⋮ Estimation and testing of gene expression heterosis ⋮ Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery ⋮ An empirical Bayes change-point model for transcriptome time-course data ⋮ Removing technical variability in RNA-seq data using conditional quantile normalization ⋮ Computational Genomics with R ⋮ Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq ⋮ Anesthetic propofol-induced gene expression changes in patients undergoing coronary artery bypass graft surgery based on dynamical differential coexpression network analysis ⋮ A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments ⋮ Statistical analysis of next generation sequencing data ⋮ A Bayesian mixture model for chromatin interaction data ⋮ Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data ⋮ RNA bioinformatics ⋮ Modeling microbial abundances and dysbiosis with beta-binomial regression ⋮ BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data ⋮ A model selection criterion for model-based clustering of annotated gene expression data ⋮ Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data ⋮ Nonparametric false discovery rate control for identifying simultaneous signals ⋮ Pathway analysis for RNA-Seq data using a score-based approach ⋮ HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data ⋮ Modeling overdispersion heterogeneity in differential expression analysis using mixtures ⋮ Classification and clustering of sequencing data using a Poisson model ⋮ Modeling association in microbial communities with clique loglinear models ⋮ A statistical perspective on the challenges in molecular microbial biology ⋮ General power and sample size calculations for high-dimensional genomic data
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