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swMATH6936MaRDI QIDQ19000FDOQ19000

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Cited In (54)

• Computational Genomics with R
• A model selection criterion for model-based clustering of annotated gene expression data
• A Bayesian mixture model for chromatin interaction data
• On computing maximum likelihood estimates for the negative binomial distribution
• Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
• Nonparametric false discovery rate control for identifying simultaneous signals
• A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
• Identifying atypically expressed chromosome regions using RNA-Seq data
• Computational cell biology. Methods and protocols
• Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
• Statistical analysis of microbiome data with R
• An empirical Bayes change-point model for transcriptome time-course data
• Statistical genomics. Methods and protocols
• BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data
• Removing technical variability in RNA-seq data using conditional quantile normalization
• Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data
• A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
• Modeling association in microbial communities with clique loglinear models
• Title not available (Why is that?)
• Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
• Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
• Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
• RNA bioinformatics
• Modeling read counts for CNV detection in exome sequencing data
• Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
• Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
• Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
• Contrastive latent variable modeling with application to case-control sequencing experiments
• Modeling overdispersion heterogeneity in differential expression analysis using mixtures
• Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
• Structured hierarchical models for probabilistic inference from perturbation screening data
• HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
• Bayesian estimation of differential transcript usage from RNA-seq data
• Classification and clustering of sequencing data using a Poisson model
• Bayesian analysis of RNA-Seq data using a family of negative binomial models
• Modeling microbial abundances and dysbiosis with beta-binomial regression
• Estimation and testing of gene expression heterosis
• No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
• Bioinformatics. Volume II: structure, function, and applications
• Random forests in count data modelling: an analysis of the influence of data features and overdispersion on regression performance
• General power and sample size calculations for high-dimensional genomic data
• Bioinformatics for High Throughput Sequencing
• A sparse negative binomial classifier with covariate adjustment for RNA-seq data
• Comparing segmentation methods for genome annotation based on RNA-seq data
• Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
• A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus
• Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis
• A statistical perspective on the challenges in molecular microbial biology
• MATHT: a web server for comprehensive transcriptome data analysis
• Statistical analysis of next generation sequencing data
• Anesthetic propofol-induced gene expression changes in patients undergoing coronary artery bypass graft surgery based on dynamical differential coexpression network analysis
• IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses
• Pathway analysis for RNA-seq data using a score-based approach
• A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments

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