edgeR
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Cited In (54)
- Computational Genomics with R
- A model selection criterion for model-based clustering of annotated gene expression data
- A Bayesian mixture model for chromatin interaction data
- On computing maximum likelihood estimates for the negative binomial distribution
- Controlling the false-discovery rate by procedures adapted to the length bias of RNA-seq
- Nonparametric false discovery rate control for identifying simultaneous signals
- A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
- Identifying atypically expressed chromosome regions using RNA-Seq data
- Computational cell biology. Methods and protocols
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Statistical analysis of microbiome data with R
- An empirical Bayes change-point model for transcriptome time-course data
- Statistical genomics. Methods and protocols
- BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data
- Removing technical variability in RNA-seq data using conditional quantile normalization
- Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- Modeling association in microbial communities with clique loglinear models
- Title not available (Why is that?)
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- RNA bioinformatics
- Modeling read counts for CNV detection in exome sequencing data
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
- Contrastive latent variable modeling with application to case-control sequencing experiments
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- Structured hierarchical models for probabilistic inference from perturbation screening data
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Bayesian estimation of differential transcript usage from RNA-seq data
- Classification and clustering of sequencing data using a Poisson model
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Modeling microbial abundances and dysbiosis with beta-binomial regression
- Estimation and testing of gene expression heterosis
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- Bioinformatics. Volume II: structure, function, and applications
- Random forests in count data modelling: an analysis of the influence of data features and overdispersion on regression performance
- General power and sample size calculations for high-dimensional genomic data
- Bioinformatics for High Throughput Sequencing
- A sparse negative binomial classifier with covariate adjustment for RNA-seq data
- Comparing segmentation methods for genome annotation based on RNA-seq data
- Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
- A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus
- Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis
- A statistical perspective on the challenges in molecular microbial biology
- MATHT: a web server for comprehensive transcriptome data analysis
- Statistical analysis of next generation sequencing data
- Anesthetic propofol-induced gene expression changes in patients undergoing coronary artery bypass graft surgery based on dynamical differential coexpression network analysis
- IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses
- Pathway analysis for RNA-seq data using a score-based approach
- A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments
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