Pathway analysis for RNA-seq data using a score-based approach

DOI10.1111/BIOM.12372zbMATH Open1393.62119OpenAlexW1831078363WikidataQ30986279 ScholiaQ30986279MaRDI QIDQ2805192FDOQ2805192

Yihui Zhou

Publication date: 10 May 2016

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/biom.12372

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zbMATH Keywords

linear modelRNA-seqstatistical geneticspathway analysis

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

• Title not available (Why is that?)
• Significance analysis of microarrays applied to the ionizing radiation response
• A statistical framework for testing functional categories in microarray data
• Randomization tests for multiple regression

Cited In (4)

• Assessment of LD matrix measures for the analysis of biological pathway association
• Nonparametric pathway-based regression models for analysis of genomic data
• Statistical inference for high-dimensional pathway analysis with multiple responses
• Accounting for extra-binomial variability with differentially expressed genetic pathway data: a collaborative bioinformatic study

Uses Software

• Bioconductor
• edgeR
• Voom
• GSVA
• ROAST
• gage
• GSAASeqSP
• goseq
• sydSeq

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