A two-stage Poisson model for testing RNA-Seq data
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Publication:458254
DOI10.2202/1544-6115.1627zbMATH Open1296.92139OpenAlexW1537947034MaRDI QIDQ458254FDOQ458254
Authors: Paul L. Auer, Rebecca W. Doerge 
Publication date: 7 October 2014
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.2202/1544-6115.1627
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Cited In (21)
- Empirical Bayes analysis of RNA sequencing experiments with auxiliary information
- Dynamic linear model for the identification of miRNAs in next-generation sequencing data
- Identifying atypically expressed chromosome regions using RNA-Seq data
- A comparison study on modeling of clustered and overdispersed count data for multiple comparisons
- Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis
- Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- Simultaneous inference of gene isoform expression for RNA sequencing data
- Statistical modeling of RNA-Seq data
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- SimBPDD: Simulating differential distributions in Beta-Poisson models, in particular for single-cell RNA sequencing data
- Contrastive latent variable modeling with application to case-control sequencing experiments
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Classification and clustering of sequencing data using a Poisson model
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- RNA Pol II transcription model and interpretation of GRO-seq data
- Pathway analysis for RNA-seq data using a score-based approach
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
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