Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies

DOI10.1214/20-AOAS1413MaRDI QIDQ2245161zbMATH OpenOpenAlexFDO

Authors Rong Zhang, Zhao Ren, Juan C. Celedón, Wei Chen

Publication date 15 November 2021

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1214/20-aoas1413

zbMATH Keywords

asymptotic normalitymultiple testingbias correctionRNA-seq dataPoisson graphical modelasthma genomics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Probabilistic graphical models (62H22) Protein sequences, DNA sequences (92D20)

Recommendations

• A two-stage Poisson model for testing RNA-Seq data
• Estimation of sparse directed acyclic graphs for multivariate counts data
• A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
• Learning gene regulatory networks from next generation sequencing data

Cites work

• scientific article; zbMATH DE number 3513115 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• A statistical framework for data integration through graphical models with application to cancer genomics
• Asymptotic normality and optimalities in estimation of large Gaussian graphical models
• Confidence intervals for high-dimensional inverse covariance estimation
• Confidence intervals for low dimensional parameters in high dimensional linear models
• Differential Markov random field analysis with an application to detecting differential microbial community networks
• Emergence of Scaling in Random Networks
• Gaussian graphical model estimation with false discovery rate control
• Graphical models via univariate exponential family distributions
• High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
• High-dimensional Ising model selection with Bayesian information criteria
• High-dimensional semiparametric Gaussian copula graphical models
• Honest confidence regions and optimality in high-dimensional precision matrix estimation
• Learning gene regulatory networks from next generation sequencing data
• On asymptotically optimal confidence regions and tests for high-dimensional models
• The huge Package for High-dimensional Undirected Graph Estimation in R
• The nonparanormal: semiparametric estimation of high dimensional undirected graphs

Cited in

(2)

• Learning gene regulatory networks from next generation sequencing data
• Structure learning of exponential family graphical model with false discovery rate control

Describes a project that uses

Uses Software

• huge
• DEseq
• ToppGene Suite
• TestBMN
• SILGGM

This page was built for publication: Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2245161)