DEseq
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- On the estimation of mixtures of Poisson regression models with large number of components
- DESMAN
- clustRviz
- MIMIX
- ZIBBSeqDiscovery
- DESeq2
- glmGamPoi
- Bioconductor
- MATHT: a web server for comprehensive transcriptome data analysis
- On computing maximum likelihood estimates for the negative binomial distribution
- ePCA: high dimensional exponential family PCA
- Detecting rare and faint signals via thresholding maximum likelihood estimators
- gcrma
- vsn
- edgeR
- RankProd
- DEGseq
- A bioequivalence test by the direct comparison of concentration-versus-time curves using local polynomial smoothers
- SAM
- MAANOVA
- Network modeling in biology: statistical methods for gene and brain networks
- Fully Bayesian analysis of allele-specific RNA-seq data
- Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
- A statistical perspective on the challenges in molecular microbial biology
- casper
- corpor
- Poisson mean vector estimation with nonparametric maximum likelihood estimation and application to protein domain data
- Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
- Identifying atypically expressed chromosome regions using RNA-Seq data
- BaySeq
- EDAseq
- RUVseq
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- limma
- Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
- A compositional model to assess expression changes from single-cell RNA-seq data
- Statistical analysis of next generation sequencing data
- A Bayesian mixture model for chromatin interaction data
- Two-sample test for sparse high-dimensional multinomial distributions
- BioHMM
- lpc
- Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
- QuasiSeq
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- MDM
- EDGE
- Netsim
- SPECTRODE
- ShrinkBayes
- Voom
- svaseq
- Diffcorr
- Some approximation results for Bayesian posteriors that involve the Hurwitz-Lerch zeta distribution
- Estimation of sparse directed acyclic graphs for multivariate counts data
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- ShortRead
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
- HTSeq
- Galaxy
- DoubleExpSeq
- DiffSplice
- TopHat
- RSEM
- EBSeq
- LAS
- Enrichr
- PROPER
- recount
- featureCounts
- NBC
- bc3net
- DGCA
- CNV-seq
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Significance tests to identify regulated proteins based on a large number of small samples
- Scotty
- GENE-counter
- EmpDiff
- diffHic
- Interactive Visualization of Hierarchically Structured Data
- TFisher
- BiGGEsTS
- MAPPFinder
- DEXUS
- compcodeR
- SC3
- Sincera
- structSSI
- trimAl
- zCompositions
- MetamicrobiomeR
- DNA
- MATHT
- TopHat-Fusion
- miTarget
- FunCoup
- DNMAD
This page was built for software: DEseq
