QuasiSeq

MaRDI QIDQ23305swMATHCRANFDO

Authors Steve Lund, R Development Core Team, Long Qu, Klirk Bhasavanich, Ian Marschner

Last update 15 August 2022

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 1.0-1, 1.0-2, 1.0-3, 1.0-4, 1.0-5, 1.0-6, 1.0-7, 1.0-8, 1.0-10-1, 1.0-10-2, 1.0-11-0

Official website http://cran.r-project.org/web/packages/QuasiSeq/index.html

Source code repository https://github.com/cran/QuasiSeq

Cites work

• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

Described by source

• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

Cited in

(14)

• Detecting rare and faint signals via thresholding maximum likelihood estimators
• BaySeq
• DEseq
• RUVseq
• No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
• ShrinkBayes
• Modeling overdispersion heterogeneity in differential expression analysis using mixtures
• csaw
• What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
• diffHic
• DEXUS
• compcodeR
• Estimation and testing of gene expression heterosis
• Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates

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