Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
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DOI10.1515/1544-6115.1826zbMATH Open1296.92187OpenAlexW1490261451WikidataQ30574980 ScholiaQ30574980MaRDI QIDQ100304FDOQ100304
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- Detection of differentially expressed genes in discrete single‐cell RNA sequencing data using a hurdle model with correlated random effects
- A penalized likelihood approach for robust estimation of isoform expression
- Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis
- Combining single and paired end RNA-seq data for differential expression analyses
- Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
- Removing technical variability in RNA-seq data using conditional quantile normalization
- Transcriptomics: quantifying non-uniform read distribution using MapReduce
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
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- MSIQ: joint modeling of multiple RNA-seq samples for accurate isoform quantification
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Detecting rare and faint signals via thresholding maximum likelihood estimators
- A flexible model for correlated count data, with application to multicondition differential expression analyses of single-cell RNA sequencing data
- Simultaneous inference of gene isoform expression for RNA sequencing data
- QuasiSeq
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
- Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
- An Enhanced Quantile Approach for Assessing Differential Gene Expressions
- Contrastive latent variable modeling with application to case-control sequencing experiments
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Generate gene expression profile from high-throughput sequencing data
- Estimation and testing of gene expression heterosis
- Deconvolution of base pair level RNA-seq read counts for quantification of transcript expression levels
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- Analysis of expression profile and gene variation via development of methods for next generation sequencing data
- Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis
- Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
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