An Enhanced Quantile Approach for Assessing Differential Gene Expressions

DOI10.1111/J.1541-0420.2007.00903.XMaRDI QIDQ3506489zbMATH OpenOpenAlexWikidataFDO

Authors Huixia Wang, Xuming He

Publication date 13 June 2008

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/j.1541-0420.2007.00903.x

zbMATH Keywords

information sharingquantile regressionsimulations

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Estimation in survival analysis and censored data (62N02) Testing in survival analysis and censored data (62N03) Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05)

Recommendations

• Detecting Differential Expressions in GeneChip Microarray Studies
• A statistical method for estimating the proportion of differentially expressed genes
• Enhanced Quantile Normalization of Microarray Data to Reduce Loss of Information in Gene Expression Profiles
• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
• Improved statistical tests for differential gene expression by shrinking variance components estimates
• M-quantile regression analysis of temporal gene expression data
• scientific article; zbMATH DE number 1750184
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Comparison of various statistical methods for identifying differential gene expression in replicated microarray data

Cites work

• A Direct Approach to False Discovery Rates
• A general Bahadur representation of M-estimators and its application to linear regression with nonstochastic designs
• A Model-Based Background Adjustment for Oligonucleotide Expression Arrays
• Detecting Differential Expressions in GeneChip Microarray Studies
• Improved statistical tests for differential gene expression by shrinking variance components estimates

Cited in

(7)

• Conditional mean and quantile dependence testing in high dimension
• M-quantile regression analysis of temporal gene expression data
• Detecting Differential Expressions in GeneChip Microarray Studies
• Improved statistical tests for differential gene expression by shrinking variance components estimates
• Accurate Ranking of Differentially Expressed Genes by a Distribution-Free Shrinkage Approach
• Quantitative noise analysis for gene expression microarray experiments
• Estimation in quantile regression models for correlated data with diverging number of covariates and large cluster sizes

Describes a project that uses

Uses Software

• gcrma
• SAM

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