Identifying relevant covariates in RNA-seq analysis by pseudo-variable augmentation

DOI10.1007/S13253-024-00665-3MaRDI QIDQ7262186zbMATH OpenFDO

Authors Yet Tien Nguyen, Dan Nettleton

Publication date 11 June 2026

Published in Journal of Agricultural, Biological, and Environmental Statistics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/S13253-024-00665-3

zbMATH Keywords

differential expression analysisfalse discovery ratefalse selection ratevariable selection

Mathematics Subject Classification ID

Applications of statistics to environmental and related topics (62P12)

Cites work

• A Direct Approach to False Discovery Rates
• Controlling Variable Selection by the Addition of Pseudovariables
• Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
• Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
• Handbook of measurement error models
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Robust Locally Weighted Regression and Smoothing Scatterplots
• Statistical genomics. Methods and protocols
• Using simulation studies to evaluate statistical methods
• Variable selection -- a review and recommendations for the practicing statistician

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