Removing technical variability in RNA-seq data using conditional quantile normalization
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Recommendations
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- Statistical analysis of next generation sequencing data
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Deconvolution of base pair level RNA-seq read counts for quantification of transcript expression levels
- Statistical modeling of RNA-Seq data
Cites work
- A Model-Based Background Adjustment for Oligonucleotide Expression Arrays
- Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
- Small-sample estimation of negative binomial dispersion, with applications to SAGE data
- Spectral analysis of localization in nonlocal and over-nonlocal materials with softening plasticity or damage
Cited in
(8)- Identifying atypically expressed chromosome regions using RNA-Seq data
- RCRnorm: an integrated system of random-coefficient hierarchical regression models for normalizing nanostring nCounter data
- Combining single and paired end RNA-seq data for differential expression analyses
- Unified Noncrossing Multiple Quantile Regressions Tree
- Statistical calibration of qRT-PCR, microarray and RNA-Seq gene expression data with measurement error models
- Unifying and generalizing methods for removing unwanted variation based on negative controls
- Transcriptomics: quantifying non-uniform read distribution using MapReduce
- Compressed spectral screening for large-scale differential correlation analysis with application in selecting glioblastoma gene modules
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