edgeR
From MaRDI portal
EdgeR
Cited in
(only showing first 100 items - show all)- MIMIX
- ZIBBSeqDiscovery
- SummarizedExperiment
- DESeq2
- ptmixed
- glmGamPoi
- intePareto
- STAR
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Statistical analysis of microbiome data with R
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Bioconductor
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Bayesian estimation of differential transcript usage from RNA-seq data
- vegan
- Rfam
- Bioinformatics. Volume II: structure, function, and applications
- MATHT: a web server for comprehensive transcriptome data analysis
- Computational cell biology. Methods and protocols
- On computing maximum likelihood estimates for the negative binomial distribution
- beadarray
- oligo
- gcrma
- RankProd
- DEGseq
- CNAmet
- affy
- SAM
- minet
- A statistical perspective on the challenges in molecular microbial biology
- ARSyN
- casper
- corpor
- A sparse negative binomial classifier with covariate adjustment for RNA-seq data
- Contrastive latent variable modeling with application to case-control sequencing experiments
- Structured hierarchical models for probabilistic inference from perturbation screening data
- Bayesian mixed effects models for zero-inflated compositions in microbiome data analysis
- A novel individualized drug repositioning approach for predicting personalized candidate drugs for type 1 diabetes mellitus
- GUniFrac
- Identifying atypically expressed chromosome regions using RNA-Seq data
- Bayesian sparse multivariate regression with asymmetric nonlocal priors for microbiome data analysis
- BaySeq
- DEseq
- EDAseq
- RUVseq
- Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery
- An empirical Bayes change-point model for transcriptome time-course data
- limma
- Statistical analysis of next generation sequencing data
- A Bayesian mixture model for chromatin interaction data
- RNA bioinformatics
- Nonparametric false discovery rate control for identifying simultaneous signals
- BioHMM
- AUGUSTUS
- maSigPro
- Modeling association in microbial communities with clique loglinear models
- PoiClaClu
- QuasiSeq
- General power and sample size calculations for high-dimensional genomic data
- GATK
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- SynTReN
- MDM
- BMSS
- Netsim
- Phyloseq
- HmmSeq
- BioNet
- KEGG
- ShrinkBayes
- Voom
- svaseq
- miRBase
- Biostrings
- Random forests in count data modelling: an analysis of the influence of data features and overdispersion on regression performance
- Pathway analysis for RNA-seq data using a score-based approach
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- ShortRead
- HTSeq
- Galaxy
- DOSE
- FastQC
- DoubleExpSeq
- DiffSplice
- Trimmomatic
- Rnaz
- TopHat
- RSEM
- EBSeq
- NGS QC Toolkit
- BioMart
- BSgenome
- GEOquery
- inSilicoDb
- DAVID
- GSVA
- BEDTools
- Gviz
- Rtracklayer
- GenomeGraphs
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